View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_24 (Length: 363)
Name: NF1243_high_24
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 336
Target Start/End: Complemental strand, 37596465 - 37596138
Alignment:
| Q |
9 |
agcataggtcaatttcaaagcatttaccactgaaaaggacaagatttttgacacttttacttcacagtatatgcatcaataataatagacaaaatgacaa |
108 |
Q |
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| T |
37596465 |
agcataggtcaatttcaaagcatttaccactgaaaaggacaagatttttgacacttttacttcacagtatatgcatcaataataatagacaaaatgacaa |
37596366 |
T |
|
| Q |
109 |
aagcatttttacaaaattcagtaccctattgttagcaaatttcagcattgatctcttctcttctatattgtcactttctctcattctctcacaataaccc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37596365 |
aagcatttttacaaaattcagtaccctattgttagcaaatttcagcattgatctcttctcttctatattgtcactttctctcattctctcacaataaccc |
37596266 |
T |
|
| Q |
209 |
ttttttgttctttgcactttttattcaccatttgacacttttccccttagaaaatattcatttgtgaattagtaaactatgatgagtttgaaaacaagta |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37596265 |
ttttttgttctttgcactttttattcaccatttgacacttttccccttagaaaatattcatttgtgaattagtaaactatgatgagtttgaaaacaagta |
37596166 |
T |
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| Q |
309 |
acaagaaaatgataagaggtttcatgtg |
336 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
37596165 |
acaagaaaatgataagaggtttcatgtg |
37596138 |
T |
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