View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_high_28 (Length: 327)

Name: NF1243_high_28
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_high_28
NF1243_high_28
[»] chr2 (2 HSPs)
chr2 (42-316)||(3279545-3279819)
chr2 (267-315)||(17993741-17993789)
[»] chr6 (67 HSPs)
chr6 (44-316)||(26341990-26342262)
chr6 (44-315)||(28098426-28098697)
chr6 (56-313)||(28234435-28234692)
chr6 (52-313)||(28185233-28185494)
chr6 (52-315)||(28180981-28181244)
chr6 (52-316)||(28226817-28227081)
chr6 (46-313)||(26893530-26893797)
chr6 (52-315)||(28242671-28242934)
chr6 (52-310)||(26936961-26937219)
chr6 (163-316)||(26646457-26646610)
chr6 (163-316)||(26752425-26752578)
chr6 (163-315)||(28149916-28150067)
chr6 (192-315)||(27678953-27679076)
chr6 (192-315)||(27677671-27677794)
chr6 (197-315)||(27706459-27706577)
chr6 (52-315)||(28297770-28298033)
chr6 (52-315)||(28514040-28514303)
chr6 (52-315)||(28325348-28325611)
chr6 (164-315)||(25579698-25579849)
chr6 (89-316)||(28781043-28781270)
chr6 (59-316)||(26802316-26802573)
chr6 (198-316)||(27593076-27593194)
chr6 (89-315)||(27611059-27611285)
chr6 (89-315)||(27698551-27698777)
chr6 (167-315)||(26142847-26142995)
chr6 (89-316)||(28786182-28786409)
chr6 (89-316)||(28792303-28792530)
chr6 (89-315)||(27718436-27718662)
chr6 (89-315)||(27724902-27725128)
chr6 (167-315)||(25481724-25481872)
chr6 (167-315)||(26055908-26056056)
chr6 (167-315)||(26075878-26076026)
chr6 (192-316)||(26655996-26656120)
chr6 (192-316)||(26761967-26762091)
chr6 (163-315)||(31284266-31284418)
chr6 (192-315)||(25538547-25538670)
chr6 (98-313)||(28139454-28139669)
chr6 (89-315)||(26622880-26623106)
chr6 (89-315)||(26728858-26729084)
chr6 (89-316)||(27604761-27604988)
chr6 (167-315)||(26048827-26048975)
chr6 (167-315)||(26069996-26070144)
chr6 (192-315)||(27338122-27338245)
chr6 (192-315)||(27398862-27398985)
chr6 (67-314)||(2184170-2184417)
chr6 (224-314)||(26823879-26823969)
chr6 (200-309)||(26884178-26884287)
chr6 (192-303)||(25506978-25507089)
chr6 (89-316)||(27531253-27531480)
chr6 (254-316)||(26975121-26975183)
chr6 (254-315)||(25071728-25071789)
chr6 (182-314)||(2184895-2185027)
chr6 (68-316)||(26848543-26848791)
chr6 (68-208)||(27214300-27214440)
chr6 (68-208)||(27234788-27234928)
chr6 (269-316)||(26635774-26635821)
chr6 (269-316)||(26741740-26741787)
chr6 (89-300)||(27229136-27229347)
chr6 (163-313)||(26861594-26861744)
chr6 (266-316)||(27214498-27214548)
chr6 (266-316)||(27234680-27234730)
chr6 (128-209)||(26617269-26617350)
chr6 (128-209)||(26723197-26723278)
chr6 (100-137)||(28149590-28149627)
chr6 (257-316)||(27665173-27665232)
chr6 (269-315)||(26949745-26949791)
chr6 (68-209)||(26811392-26811533)
[»] scaffold0038 (4 HSPs)
scaffold0038 (56-315)||(34596-34855)
scaffold0038 (52-316)||(27315-27579)
scaffold0038 (52-315)||(42833-43096)
scaffold0038 (52-315)||(116663-116926)
[»] scaffold0019 (1 HSPs)
scaffold0019 (52-315)||(58339-58602)
[»] chr1 (3 HSPs)
chr1 (163-315)||(268401-268553)
chr1 (242-315)||(28164406-28164479)
chr1 (201-315)||(28127723-28127837)
[»] scaffold0349 (2 HSPs)
scaffold0349 (89-315)||(3478-3705)
scaffold0349 (89-315)||(14413-14638)
[»] scaffold0419 (1 HSPs)
scaffold0419 (89-316)||(7429-7656)
[»] scaffold0277 (2 HSPs)
scaffold0277 (89-316)||(13688-13915)
scaffold0277 (89-315)||(4728-4954)
[»] chr8 (2 HSPs)
chr8 (163-315)||(29273827-29273979)
chr8 (61-142)||(31903727-31903808)
[»] chr4 (6 HSPs)
chr4 (163-315)||(18679611-18679763)
chr4 (163-312)||(18731551-18731700)
chr4 (163-315)||(18655521-18655673)
chr4 (95-315)||(18699444-18699664)
chr4 (163-312)||(18724132-18724281)
chr4 (42-315)||(5091011-5091284)
[»] scaffold1254 (1 HSPs)
scaffold1254 (89-270)||(19-200)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 42 - 316
Target Start/End: Original strand, 3279545 - 3279819
Alignment:
Q  42 catctttcttttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagc 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3279545 catctttcttttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctatagagc 3279644  T
Q  142 tttatgtgacggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatg 241  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3279645 tttaagtgacggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatg 3279744  T
Q  242 atttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3279745 atttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcat 3279819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 17993789 - 17993741
Alignment:
Q  267 actatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  17993789 actatgcttcttcttcattttgtttagacgaacttgtccacatcattca 17993741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 67)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 44 - 316
Target Start/End: Complemental strand, 26342262 - 26341990
Alignment:
Q  44 tctttcttttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctt 143  Q
    ||||||| ||| ||||| ||||||||||| ||||| || ||| | | ||||||||||| || ||||||||||||||||||||| ||| |||||| ||||     
T  26342262 tctttctcttcattctcatatggattcacatatgatgtgttcctcaattttaggggcattggcactcgctatggttttactggcaatatctatagagctc 26342163  T
Q  144 tatgtgacggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgat 243  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||| |||||||||| |||    
T  26342162 tatgtgacggtggagtccgcaccttcattgatgatagggagcttcatggaggtgacaaaatcacacaatcacttgtcaaagccattgaagagtccaggat 26342063  T
Q  244 ttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    ||| |||||  | ||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  26342062 tttcattccaattttctcaatcaactatgcttcttcttcgttttgtttggacgaacttgtccacatcattcat 26341990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 44 - 315
Target Start/End: Complemental strand, 28098697 - 28098426
Alignment:
Q  44 tctttcttttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctt 143  Q
    ||||||| ||| |||||||||||||||||||||||||| ||  | | |||||||||||| |||||||| ||||||||||||||||||||||| ||||||     
T  28098697 tctttctcttcattctcttatggattcacctatgacgtgtttcttaattttaggggcaccgacactcggtatggttttactggaaatctctacaaagctc 28098598  T
Q  144 tatgtgacggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgat 243  Q
    | |||||||| ||| || |||||||||||||  |||  || ||||||| |||||||  |||||||||||| ||||||||||||||||||||||||| |||    
T  28098597 tttgtgacggaggagtccgcaccttcattgaccataaagatcttcatgaaggtgatagaatcacacaatcccttgtcaaggccatcgaagagtccaggat 28098498  T
Q  244 ttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||| ||||||||||||||||  ||||||||||||||| | ||||||||||| ||||||||||||||||||||    
T  28098497 tttaattccggtcttctctaagaactatgcttcttctttgttttgtttggatgaacttgtccacatcattca 28098426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 56 - 313
Target Start/End: Original strand, 28234435 - 28234692
Alignment:
Q  56 ttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtg 155  Q
    ||||| |||||||||||||||||||| ||| | |||||||| || | ||||||||||||||||||||| | ||||||||||| |||| | ||| ||   |    
T  28234435 ttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagg 28234534  T
Q  156 gattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggt 255  Q
    || ||  ||||||||||||||| ||||||||||| ||||| |||||||| |||| ||||||| |||||||||| |||||||| | |||||| ||||| ||    
T  28234535 gaatccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgt 28234634  T
Q  256 cttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcatt 313  Q
    ||| |||||||| ||||||||||||  |||||| ||||||||||||||||||||||||    
T  28234635 cttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcatt 28234692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 52 - 313
Target Start/End: Original strand, 28185233 - 28185494
Alignment:
Q  52 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgac 151  Q
    ||||||||| |||||||||||||||||||| ||| | || ||||| || | ||||||||| ||| ||||||||||||||||| ||| |||| | ||||||    
T  28185233 ttccttctcctatggattcacctatgacgtgttccttagctttagaggtagtgacactcgttatcgttttactggaaatctcaatagagctctttgtgac 28185332  T
Q  152 ggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattc 251  Q
       ||| || | |||||||| ||||| || |||||||| |||||||| ||||| |||  ||||||| |||||||||| |||||||| | |||||| ||||    
T  28185333 aagggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggattttcattc 28185432  T
Q  252 cggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcatt 313  Q
    | ||||| |||||||| ||||||||||||  |||||| ||||||||||||||||||||||||    
T  28185433 ccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcatt 28185494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 52 - 315
Target Start/End: Original strand, 28180981 - 28181244
Alignment:
Q  52 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgac 151  Q
    ||||||||| |||||||||||||||||||  ||| | || ||||| ||   ||||||||| ||||||||||||||||||||| ||| |||| | ||||||    
T  28180981 ttccttctcctatggattcacctatgacgcgttccttagctttagaggtggtgacactcgttatggttttactggaaatctcaatagagctctttgtgac 28181080  T
Q  152 ggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattc 251  Q
       ||| || | |||||||| ||||| || |||||||| |||||||| ||||| |||  ||||||| |||||||||| |||||||| | |||||| ||||    
T  28181081 aagggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctaggattttcattc 28181180  T
Q  252 cggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    | ||||| |||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||    
T  28181181 ccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattca 28181244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 52 - 316
Target Start/End: Original strand, 28226817 - 28227081
Alignment:
Q  52 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgac 151  Q
    |||||||||||||||||||||||||||||| ||| | |||||||| || | ||||||||| ||||||||||||||||||||||| |  | | | ||| |     
T  28226817 ttccttctcttatggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctacagtgatctttgtaag 28226916  T
Q  152 ggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattc 251  Q
       ||| |   ||| ||| |||||||||| |||||||| |||||||||||||| |||  ||||||| |||||| ||| ||||| || | |||||| ||||    
T  28226917 aagggaattcacacattctttgatgatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattc 28227016  T
Q  252 cggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    | ||||| |||||||| ||||||||||||  |||||| |||||||||||||||||||||||||||    
T  28227017 ctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcat 28227081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 46 - 313
Target Start/End: Complemental strand, 26893797 - 26893530
Alignment:
Q  46 tttcttttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagcttta 145  Q
    ||||| ||||| ||| |||||||||||||| || || ||| | | |||||| ||| |||||||||| | ||||||||| ||  |||| ||||||||| |     
T  26893797 tttctcttcctcctcgtatggattcacctacgatgtcttcctcaattttagaggctctgacactcgttttggttttacgggtcatctttataaagctctt 26893698  T
Q  146 tgtgacggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgattt 245  Q
    |||||  ||||| |   |||||||||||||||||  ||||||||| ||||||| |||||| ||| ||||||| ||||||| || |||||||| ||||| |    
T  26893697 tgtgatagtggaattcacaccttcattgatgatacagagcttcatagaggtgacgaaatctcaccatcacttatcaaggcaattgaagagtctatgatat 26893598  T
Q  246 ttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcatt 313  Q
      ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  26893597 acattccagtcctctctatcaactatgcttcttctatattttgtttggaagaactcgtcaaaatcatt 26893530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 52 - 315
Target Start/End: Original strand, 28242671 - 28242934
Alignment:
Q  52 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgac 151  Q
    |||| |||| ||||| || |||||||| || ||| | |||||||| || | ||||||||| ||||||||||||||||||||||| |||| | | ||| |     
T  28242671 ttccctctcctatgggtttacctatgatgtcttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaag 28242770  T
Q  152 ggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattc 251  Q
       ||| |  |||||||||||||||| || || ||||  ||||||||  |||| |||| ||||||| |||||||||| |||||||| | |||||| ||||    
T  28242771 aagggaattcgcaccttcattgatgacagagaacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattc 28242870  T
Q  252 cggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    | ||||| |||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||    
T  28242871 ctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattca 28242934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 52 - 310
Target Start/End: Original strand, 26936961 - 26937219
Alignment:
Q  52 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgac 151  Q
    |||||||||||||||||||||||||||||| ||| | ||||| || ||||| ||||||||||    ||||| |||  |||| || |||||| | |||||     
T  26936961 ttccttctcttatggattcacctatgacgtgttcctcagtttcagaggcaccgacactcgcttccattttattggtcatctttacaaagctctttgtgat 26937060  T
Q  152 ggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattc 251  Q
     ||||| |  |||||||||||||||| | |||||| |||||||| || |||||||||| ||||||||||||||| || ||||| |||  ||||   || |    
T  26937061 tgtggaattcgcaccttcattgatgacaaggagctccatggaggagaagaaatcacaccatcacttgtcaaggcaattgaagattccgggattgccatac 26937160  T
Q  252 cggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatc 310  Q
    | || |||||||||||||||||  |||||  ||||||||||||||||||||||||||||    
T  26937161 ctgtattctctatcaactatgccacttcttcattttgtttggacgaacttgtccacatc 26937219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 163 - 316
Target Start/End: Original strand, 26646457 - 26646610
Alignment:
Q  163 caccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctct 262  Q
    |||||||||||||||| | || ||| |  |||| ||||||||||||| ||||||  |||||||||| ||||| || | |||||||||||| || || |||    
T  26646457 caccttcattgatgattgtgatcttaagagaggagatgaaatcacaccatcactcatcaaggccattgaagaatctaggatttttattcctgtgttttct 26646556  T
Q  263 atcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  26646557 atcaactatgcctcttctaaattttgtttggacgaacttgtccacatcattcat 26646610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 163 - 316
Target Start/End: Original strand, 26752425 - 26752578
Alignment:
Q  163 caccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctct 262  Q
    |||||||||||||||| | || ||| |  |||| ||||||||||||| ||||||  |||||||||| ||||| || | |||||||||||| || || |||    
T  26752425 caccttcattgatgattgtgatcttaagagaggagatgaaatcacaccatcactcatcaaggccattgaagaatctaggatttttattcctgtgttttct 26752524  T
Q  263 atcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  26752525 atcaactatgcctcttctaaattttgtttggacgaacttgtccacatcattcat 26752578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 163 - 315
Target Start/End: Original strand, 28149916 - 28150067
Alignment:
Q  163 caccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctct 262  Q
    ||||||||||||||||| ||||||| |  |||| || |||||||||| ||||||  |||||||||| |||||||||| |||||| |||||  ||||||||    
T  28149916 caccttcattgatgatacggagctttaacgaggggacgaaatcacaccatcactc-tcaaggccattgaagagtccaggattttcattccaatcttctct 28150014  T
Q  263 atcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||||| |||||    
T  28150015 atcaactatacttcttcttcattttgtttggacgaacttgtccacattattca 28150067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 192 - 315
Target Start/End: Original strand, 27678953 - 27679076
Alignment:
Q  192 gaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgttt 291  Q
    |||| ||||||||||||| ||||||| |||||||||| |||||||| | |||||||||||| || || |||||||||||||| ||||||  |||||||||    
T  27678953 gaggagatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttgttt 27679052  T
Q  292 ggacgaacttgtccacatcattca 315  Q
    ||||||||||||||||||||||||    
T  27679053 ggacgaacttgtccacatcattca 27679076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 27677794 - 27677671
Alignment:
Q  192 gaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgttt 291  Q
    |||| ||||||||||||| ||||||| |||||||||| |||||||| | |||||||||| | || || |||||||||||||| ||||||  |||||||||    
T  27677794 gaggggatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattgctgtgttttctatcaactatgcctcttcttcattttgttt 27677695  T
Q  292 ggacgaacttgtccacatcattca 315  Q
    ||||||||||||||||||||||||    
T  27677694 ggacgaacttgtccacatcattca 27677671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 197 - 315
Target Start/End: Complemental strand, 27706577 - 27706459
Alignment:
Q  197 gatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgtttggacg 296  Q
    ||||||||||||| ||||||| |||||||||| |||||||| | |||||||||||| || || ||||||| |||||| ||||||  ||||||||||||||    
T  27706577 gatgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcacctatgcctcttcttcattttgtttggacg 27706478  T
Q  297 aacttgtccacatcattca 315  Q
    |||||||||||||||||||    
T  27706477 aacttgtccacatcattca 27706459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 52 - 315
Target Start/End: Complemental strand, 28298033 - 28297770
Alignment:
Q  52 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgt--g 149  Q
    ||||||||| |||||||||||  ||||||| ||| | |||||||| || | |||||| |||||  |||||| |||||||||| | |||| | | |||  |    
T  28298033 ttccttctcctatggattcactcatgacgttttcctaagttttagaggtagtgacacacgctacagttttattggaaatctccacaaagatctttgtagg 28297934  T
Q  150 acggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttat 249  Q
    | || | |||| |||||||||||||||| || |||||| | |||||||| ||||| |||| ||||||| |||||  ||| |||||| | | |||||| ||    
T  28297933 aagg-gaattc-gcaccttcattgatgacagagagcttaaaggaggtgacgaaataacaccatcacttttcaagcacattgaagagactaggattttcat 28297836  T
Q  250 tccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||| ||||| |||| ||| ||||||||||||  |||||| ||||||||||||||||||||||||||    
T  28297835 tcctgtcttatctaccaattatgcttcttcttcattttgcttggacgaacttgtccacatcattca 28297770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 52 - 315
Target Start/End: Original strand, 28514040 - 28514303
Alignment:
Q  52 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgt--g 149  Q
    ||||||||| |||||||||||  ||||||| ||| | |||||||| || | |||||| |||||  |||||| |||||||||| | |||| | | |||  |    
T  28514040 ttccttctcctatggattcactcatgacgttttcctaagttttagaggtagtgacacacgctacagttttattggaaatctccacaaagatctttgtagg 28514139  T
Q  150 acggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttat 249  Q
    | || | |||| |||||||||||||||| || |||||| | |||||||| ||||| |||| ||||||| |||||  ||| |||||| | | |||||| ||    
T  28514140 aagg-gaattc-gcaccttcattgatgacagagagcttaaaggaggtgacgaaataacaccatcacttttcaagcacattgaagagactaggattttcat 28514237  T
Q  250 tccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||| ||||| |||| ||| ||||||||||||  |||||| ||||||||||||||||||||||||||    
T  28514238 tcctgtcttatctaccaattatgcttcttcttcattttgcttggacgaacttgtccacatcattca 28514303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 52 - 315
Target Start/End: Original strand, 28325348 - 28325611
Alignment:
Q  52 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgt-ga 150  Q
    |||||| || |||||||||||||||||||| ||| | |||||||| || | ||||||||| ||||||||||||||||||||||| |||| | | ||| |     
T  28325348 ttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtagg 28325447  T
Q  151 cggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttatt 250  Q
      | | |||| | |||||||||||||| |  || |||||  ||||||| ||||| ||||  |||||| |||||||||| |||||||| | |||||| |||    
T  28325448 aagagaattc-gtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcatt 28325546  T
Q  251 ccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||  | || |||||||| ||||||||||||   ||||| ||||| |||||||||||||| |||||    
T  28325547 cctattttgtctatcaattatgcttcttcttccttttgcttggatgaacttgtccacattattca 28325611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 164 - 315
Target Start/End: Original strand, 25579698 - 25579849
Alignment:
Q  164 accttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctcta 263  Q
    |||||| |||||||||  || |||||  |||| ||||||||||||| |||||||||||||||||| ||||| || | ||||||||||||  | || |||     
T  25579698 accttctttgatgataatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctg 25579797  T
Q  264 tcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
     ||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  25579798 ccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattca 25579849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 28781043 - 28781270
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||| | |||||||| || |||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  28781043 agttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttc 28781142  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| ||||||||||||| ||||||  |||||||||||||||| || | |||||||||||| || || ||||||||||||||  |||| | ||||||    
T  28781143 aaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactatgccacttcaaaattttg 28781242  T
Q  289 tttggacgaacttgtccacatcattcat 316  Q
     |||||||||||||| ||||| ||||||    
T  28781243 cttggacgaacttgttcacattattcat 28781270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 59 - 316
Target Start/End: Original strand, 26802316 - 26802573
Alignment:
Q  59 tcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagct-ttatgtgacggtgga 157  Q
    |||||||||||||| ||  | || ||| | ||||||||||||||||||||||| || |||||||| || |||||||| || ||| |||| ||||   |||    
T  26802316 tcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttat-tgacaaggga 26802414  T
Q  158 ttctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtct 257  Q
     ||   |||||||||||||| |  || |||||  |||| ||||||||||||| ||||||  |||||||||| ||||| || |  ||||||||||| || |    
T  26802415 atccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaagaatctagaatttttattcctgtgt 26802514  T
Q  258 tctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    | |||||||||||||| ||||| | |||||| |||||||||||||| ||||| ||||||    
T  26802515 tttctatcaactatgcctcttcaaaattttgcttggacgaacttgttcacattattcat 26802573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 27593194 - 27593076
Alignment:
Q  198 atgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgtttggacga 297  Q
    |||||||||||| ||||||| |||||||||| |||||||| | |||||||||||| || || |||||||||||||| ||||||   ||||||||||||||    
T  27593194 atgaaatcacaccatcacttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacga 27593095  T
Q  298 acttgtccacatcattcat 316  Q
    ||||| |||||||||||||    
T  27593094 acttgaccacatcattcat 27593076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 89 - 315
Target Start/End: Complemental strand, 27611285 - 27611059
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  27611285 agttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttc 27611186  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
       |||| ||||||||||||| ||||||  |||||||||| || || || | |||||||||||| || || |||||||||||||| ||||||   |||||    
T  27611185 caagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttg 27611086  T
Q  289 tttggacgaacttgtccacatcattca 315  Q
    ||||||||||||||||||||| |||||    
T  27611085 tttggacgaacttgtccacataattca 27611059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 89 - 315
Target Start/End: Complemental strand, 27698777 - 27698551
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||  | |||||||| ||||||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  27698777 agttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttc 27698678  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| ||||||||||||| ||||||  |||||||||| || || || | |||||||||||| || || ||| |||||||||| ||||||  ||||||    
T  27698677 aaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctctcaactatgcatcttcttcattttg 27698578  T
Q  289 tttggacgaacttgtccacatcattca 315  Q
    ||||||||||||||||||||| |||||    
T  27698577 tttggacgaacttgtccacataattca 27698551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 26142847 - 26142995
Alignment:
Q  167 ttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatca 266  Q
    |||||||||||||  || ||| |  |||| ||||||||||||| |||||||||||||||||| ||||| || | ||||||||||||  | || |||  ||    
T  26142847 ttcattgatgataatgatcttgaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgcca 26142946  T
Q  267 actatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  26142947 actatgcatcttcttcattttgtttggacgaacttgtccacatcattca 26142995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 28786182 - 28786409
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  28786182 agttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttc 28786281  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| ||||||||||||| ||||||  |||||||||||||||| || | |||||||||||| || || ||||||||||| ||  | || | ||||||    
T  28786282 aaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacatcaaaattttg 28786381  T
Q  289 tttggacgaacttgtccacatcattcat 316  Q
     |||||||||||||| ||||| ||||||    
T  28786382 cttggacgaacttgttcacattattcat 28786409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 28792303 - 28792530
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  28792303 agttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttc 28792402  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| ||||||||||||| ||||||  |||||||||||||||| || | |||||||||||| || || ||||||||||| ||  | || | ||||||    
T  28792403 aaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacatcaaaattttg 28792502  T
Q  289 tttggacgaacttgtccacatcattcat 316  Q
     |||||||||||||| ||||| ||||||    
T  28792503 cttggacgaacttgttcacattattcat 28792530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 315
Target Start/End: Complemental strand, 27718662 - 27718436
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||  |  ||||||| ||||||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  27718662 agttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttc 27718563  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| ||||||||||||| ||||||  |||||||||| || || || | |||||||||||| || || |||||||||||||| ||||||   |||||    
T  27718562 aaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttg 27718463  T
Q  289 tttggacgaacttgtccacatcattca 315  Q
    ||||||||||||||||||||| |||||    
T  27718462 tttggacgaacttgtccacataattca 27718436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 315
Target Start/End: Complemental strand, 27725128 - 27724902
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||  | |||||||| ||||||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  27725128 agttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttc 27725029  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| ||||||||||||| ||||||  |||||||||| || || || | |||||||||||| || || |||||||||||||| | ||||   |||||    
T  27725028 aaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctattcttcgttttg 27724929  T
Q  289 tttggacgaacttgtccacatcattca 315  Q
    ||||||||||||||||||||| |||||    
T  27724928 tttggacgaacttgtccacataattca 27724902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 25481724 - 25481872
Alignment:
Q  167 ttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatca 266  Q
    ||||||||||| |  || |||||  |||| ||||||||||||| |||||||||||||||||| ||||| || | ||||| ||||||  | || |||  ||    
T  25481724 ttcattgatgaaaatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttgtattcccatattttctgcca 25481823  T
Q  267 actatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  25481824 actatgcatcttcttcattttgtttggacgaacttgtccacatcattca 25481872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 26055908 - 26056056
Alignment:
Q  167 ttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatca 266  Q
    ||||||||||| |  || |||||  |||| ||||||||||||  |||||||||||||||||||||||| ||   ||||||||||||  | || |||  ||    
T  26055908 ttcattgatgaaaatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgcca 26056007  T
Q  267 actatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  26056008 actatgcatcttcttcattttgtttggacgaacttgtccacatcattca 26056056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 26075878 - 26076026
Alignment:
Q  167 ttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatca 266  Q
    ||||||||||| |  || |||||  |||| ||||||||||||  |||||||||||||||||||||||| ||   ||||||||||||  | || |||  ||    
T  26075878 ttcattgatgaaaatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgcca 26075977  T
Q  267 actatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  26075978 actatgcatcttcttcattttgtttggacgaacttgtccacatcattca 26076026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 26655996 - 26656120
Alignment:
Q  192 gaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgttt 291  Q
    |||| ||||||||||||| |||||| || |||||||| ||||| |||| ||||||||||||  | || |||  ||||||||| ||||||  |||||||||    
T  26655996 gaggagatgaaatcacaccatcactcgttaaggccattgaagaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgttt 26656095  T
Q  292 ggacgaacttgtccacatcattcat 316  Q
    |||||||||||||||||||||||||    
T  26656096 ggacgaacttgtccacatcattcat 26656120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 26761967 - 26762091
Alignment:
Q  192 gaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgttt 291  Q
    |||| ||||||||||||| |||||| || |||||||| ||||| |||| ||||||||||||  | || |||  ||||||||| ||||||  |||||||||    
T  26761967 gaggagatgaaatcacaccatcactcgttaaggccattgaagaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgttt 26762066  T
Q  292 ggacgaacttgtccacatcattcat 316  Q
    |||||||||||||||||||||||||    
T  26762067 ggacgaacttgtccacatcattcat 26762091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 163 - 315
Target Start/End: Original strand, 31284266 - 31284418
Alignment:
Q  163 caccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctct 262  Q
    |||||||||||||||||| || |||||  |||| ||||||||||||| |||||| | ||| ||||| |||||||| | ||||||||| || || || |||    
T  31284266 caccttcattgatgatagtgaacttcaaagaggggatgaaatcacaccatcactcgacaatgccattgaagagtctaggatttttatccccgtgttttct 31284365  T
Q  263 atcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
      ||||||||| |||||    ||||||||||||||||||||||||||||||||    
T  31284366 gccaactatgcctcttcgtcgttttgtttggacgaacttgtccacatcattca 31284418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 192 - 315
Target Start/End: Original strand, 25538547 - 25538670
Alignment:
Q  192 gaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgttt 291  Q
    |||| ||||||||||||| |||||||||||||||||||||||| || |  |||||||||||  | || |||  ||||||||| ||||||  |||||||||    
T  25538547 gaggagatgaaatcacaccatcacttgtcaaggccatcgaagaatctagaatttttattcccatattttctgccaactatgcatcttcttcattttgttt 25538646  T
Q  292 ggacgaacttgtccacatcattca 315  Q
    ||||||||||||||| ||||||||    
T  25538647 ggacgaacttgtccagatcattca 25538670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 313
Target Start/End: Original strand, 28139454 - 28139669
Alignment:
Q  98 ggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttcatggaggtg 197  Q
    |||| ||||||||| |  ||||| |||||||||||||| |||||| |  ||||| ||||| ||  ||| || |||||||||||||||||||| |||||||    
T  28139454 ggcagtgacactcgtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtg 28139553  T
Q  198 atgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgtttggacga 297  Q
    | |||||  |||  ||||| || || ||||| ||||| || | |||||| || || || || || ||||||||||| ||||||   ||||| ||||||||    
T  28139554 acgaaatatcaccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttcttcgttttgcttggacga 28139653  T
Q  298 acttgtccacatcatt 313  Q
    ||||||||||||||||    
T  28139654 acttgtccacatcatt 28139669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 89 - 315
Target Start/End: Original strand, 26622880 - 26623106
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    ||||| || |||| ||||||||| || ||||| |||||||||||||| || ||| |   ||||   ||| ||  |||||||||||||||| | || ||||    
T  26622880 agtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttc 26622979  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| || ||||||| || |||||||| ||| || ||||||||||| | |||||||||||| || || |||  ||||||||| | ||||  ||||||    
T  26622980 aaagaggggacgaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgtgttttctcccaactatgcatattcttcattttg 26623079  T
Q  289 tttggacgaacttgtccacatcattca 315  Q
    |||||| ||||||||||||||||||||    
T  26623080 tttggatgaacttgtccacatcattca 26623106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 89 - 315
Target Start/End: Original strand, 26728858 - 26729084
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    ||||| || |||| ||||||||| || ||||| |||||||||||||| || ||| |   ||||   ||| ||  |||||||||||||||| | || ||||    
T  26728858 agtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttc 26728957  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| || ||||||| || |||||||| ||| || ||||||||||| | |||||||||||| || || |||  ||||||||| | ||||  ||||||    
T  26728958 aaagaggggacgaaatcaaaccatcacttgacaatgctatcgaagagtctaggatttttattcctgtgttttctcccaactatgcatattcttcattttg 26729057  T
Q  289 tttggacgaacttgtccacatcattca 315  Q
    |||||| ||||||||||||||||||||    
T  26729058 tttggatgaacttgtccacatcattca 26729084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 316
Target Start/End: Complemental strand, 27604988 - 27604761
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    ||||||||||||||||||||||| || |||||||| || |||||||| || ||| |   ||||   ||| |    |||||||||||||| |  || ||||    
T  27604988 agttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctcttactgacaagggaattcataccttcattgatgaaaatgatcttc 27604889  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
       |||| ||||||||||||| | ||||| |||||||||| || || |||| |||||||||||| || || |||||||| ||||| ||||||   |||||    
T  27604888 gaagaggagatgaaatcacaccagcacttctcaaggccattgatgaatccaggatttttattcctgtgttttctatcaaatatgcctcttcttccttttg 27604789  T
Q  289 tttggacgaacttgtccacatcattcat 316  Q
    |||||| |||||||| ||||||||||||    
T  27604788 tttggatgaacttgttcacatcattcat 27604761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 26048827 - 26048975
Alignment:
Q  167 ttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatca 266  Q
    |||||||||||||  || ||| |  |||| |||||||||||||    ||||||||||||||| ||||| || | ||||||||||||  | || |||  ||    
T  26048827 ttcattgatgataatgatcttgaaagaggagatgaaatcacacccaaacttgtcaaggccatggaagaatctaggatttttattcccatattttctgcca 26048926  T
Q  267 actatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  26048927 actatgcatcttcttcattttgtttggacgaacttgtccacatcattca 26048975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 26069996 - 26070144
Alignment:
Q  167 ttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatca 266  Q
    |||||||||||||  || ||| |  |||| |||||||||||||    ||||||||||||||| ||||| || | ||||||||||||  | || |||  ||    
T  26069996 ttcattgatgataatgatcttgaaagaggagatgaaatcacacccaaacttgtcaaggccatggaagaatctaggatttttattcccatattttctgcca 26070095  T
Q  267 actatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  26070096 actatgcatcttcttcattttgtttggacgaacttgtccacatcattca 26070144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 27338245 - 27338122
Alignment:
Q  192 gaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgttt 291  Q
    |||| ||||||| ||||| |||||||||||||||||| |||||||| | |||||| |||||  | || |||   |||||||| ||||||  |||||| ||    
T  27338245 gaggagatgaaagcacaccatcacttgtcaaggccattgaagagtctaggattttgattcccatattttctgcaaactatgcatcttcttcattttgctt 27338146  T
Q  292 ggacgaacttgtccacatcattca 315  Q
    ||||||||||||||||||||||||    
T  27338145 ggacgaacttgtccacatcattca 27338122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 27398985 - 27398862
Alignment:
Q  192 gaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgttt 291  Q
    |||| ||||||| ||||| |||||||||||||||||| |||||||| | |||||| |||||  | || |||   |||||||| ||||||  |||||| ||    
T  27398985 gaggagatgaaagcacaccatcacttgtcaaggccattgaagagtctaggattttgattcccatattttctgcaaactatgcatcttcttcattttgctt 27398886  T
Q  292 ggacgaacttgtccacatcattca 315  Q
    ||||||||||||||||||||||||    
T  27398885 ggacgaacttgtccacatcattca 27398862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 314
Target Start/End: Original strand, 2184170 - 2184417
Alignment:
Q  67 attcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcacc 166  Q
    |||||||||| |||| ||| | ||||| || ||  ||||||||||| |||||||||| || ||||| ||  | ||| ||||| |  ||||| ||  |||     
T  2184170 attcacctataacgtgttcctaagtttcagaggagctgacactcgccatggttttaccggcaatctttacgatgctctatgtaaaagtggagtccacact 2184269  T
Q  167 ttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatca 266  Q
    ||||  |||||   |||||||||  |||| | |||||| |||  ||||||| | || ||||| ||||||||||  ||||| || || || ||||| |  |    
T  2184270 ttcaaggatgacgaggagcttcaacgagggggtgaaataacagcatcacttatgaaagccattgaagagtccagaattttcatccctgttttctcaaaga 2184369  T
Q  267 actatgcttcttctatattttgtttggacgaacttgtccacatcattc 314  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  2184370 actatgcttcttcttcattttgtttggacgaacttgtccacatcattc 2184417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 26823879 - 26823969
Alignment:
Q  224 gccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattc 314  Q
    ||||| |||||||| | |||||||||||| || || |||  ||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  26823879 gccattgaagagtctaggatttttattcctgtgttttctgccaactatgcctcttcttcattttgtttggacgaacttgtccacatcattc 26823969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 26884178 - 26884287
Alignment:
Q  200 gaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaac 299  Q
    |||||||||| ||||||  |||||||||| ||||| || |  |||||||||||  | || |||| ||||||||| ||||||  |||||||||||||||||    
T  26884178 gaaatcacaccatcactcatcaaggccattgaagaatctagaatttttattccaatattttctaccaactatgcatcttcttcattttgtttggacgaac 26884277  T
Q  300 ttgtccacat 309  Q
    ||||||||||    
T  26884278 ttgtccacat 26884287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 303
Target Start/End: Complemental strand, 25507089 - 25506978
Alignment:
Q  192 gaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgttt 291  Q
    |||| ||||||||||||| |||| | ||||  ||||| ||||| || | |||||||||||||||  | |||||||||||||| ||||| | |||||||||    
T  25507089 gaggagatgaaatcacaccatcagtcgtcatcgccattgaagaatctaggatttttattccggttctttctatcaactatgcctcttcaaaattttgttt 25506990  T
Q  292 ggacgaacttgt 303  Q
    ||| ||||||||    
T  25506989 ggaggaacttgt 25506978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 316
Target Start/End: Complemental strand, 27531480 - 27531253
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||| | ||||||||| | |||||||| ||||||||||| || ||| |   ||||   ||| |||  |||||||||||||| |  || ||||    
T  27531480 agttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctataccttcattgatgacaatgatcttc 27531381  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| ||||||||||||| ||||||    || ||||| ||| | || | |||||||||||| || || |||   |||||||| ||||||  ||||||    
T  27531380 aaagaggagatgaaatcacaccatcactaaaaaatgccattgaaaaatctaggatttttattcccgtattttctgaaaactatgcatcttcttcattttg 27531281  T
Q  289 tttggacgaacttgtccacatcattcat 316  Q
    ||||||||||||||| ||||||| ||||    
T  27531280 tttggacgaacttgttcacatcactcat 27531253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 26975121 - 26975183
Alignment:
Q  254 gtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    ||||||||||   ||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  26975121 gtcttctctaaagactatgcttcttcttcattttgtttggacgaacttgtccacatcattcat 26975183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 25071728 - 25071789
Alignment:
Q  254 gtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||||||   ||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  25071728 gtcttctctaaagactatgcttcttcttcattttgtttagacgaacttgtccacatcattca 25071789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 314
Target Start/End: Original strand, 2184895 - 2185027
Alignment:
Q  182 gagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttcta 281  Q
    ||||||||  |||| | |||||| |||| ||| ||||| || ||||| ||||| ||||  ||||| || || || ||||| |   ||||||||||||||     
T  2184895 gagcttcaacgagggggtgaaataacaccatcgcttgtgaaagccattgaagaatccagaattttcatccctgttttctcaaaggactatgcttcttctt 2184994  T
Q  282 tattttgtttggacgaacttgtccacatcattc 314  Q
     |||||||||||||||||||||||| |||||||    
T  2184995 cattttgtttggacgaacttgtccatatcattc 2185027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 316
Target Start/End: Original strand, 26848543 - 26848791
Alignment:
Q  68 ttcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcacct 167  Q
    |||| |||||| || ||| | ||||| |||||||| |||||| | |   |||| ||||| ||||||||||||||| | | ||||  |||| || | ||||    
T  26848543 ttcaactatgatgtgttcattagtttcaggggcaccgacactagattcagtttcactggtaatctctataaagctctttctgacaatggaatccgaacct 26848642  T
Q  168 tcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaa 267  Q
    |||||||||| | ||| |||||  | |||||||| |||||||  || ||  |||||  ||| ||||| || | |||||  ||||  || ||||||   ||    
T  26848643 tcattgatgacaaggatcttcagagtggtgatgagatcacaccttcgctcctcaagaacattgaagactcgaggatttccattcttgtattctctgagaa 26848742  T
Q  268 ctatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    ||||||  |||||   |||||||||||||||||||||||||||||||||    
T  26848743 ctatgccacttcttcgttttgtttggacgaacttgtccacatcattcat 26848791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 27214300 - 27214440
Alignment:
Q  68 ttcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcacct 167  Q
    |||| ||||||||| ||| | ||||| ||||| || ||||||||  | ||||| || || ||||||||||||||| | ||||||   ||| || | ||||    
T  27214300 ttcagctatgacgtgttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaacct 27214399  T
Q  168 tcattgatgatagggagcttcatggaggtgatgaaatcaca 208  Q
    |||||||||| | |||||||||  ||||||| |||||||||    
T  27214400 tcattgatgacaaggagcttcagagaggtgacgaaatcaca 27214440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 27234928 - 27234788
Alignment:
Q  68 ttcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcacct 167  Q
    |||| ||||||||| ||| | ||||| ||||| || ||||||||  | ||||| || || ||||||||||||||| | ||||||   ||| || | ||||    
T  27234928 ttcagctatgacgtgttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaacct 27234829  T
Q  168 tcattgatgatagggagcttcatggaggtgatgaaatcaca 208  Q
    |||||||||| | |||||||||  ||||||| |||||||||    
T  27234828 tcattgatgacaaggagcttcagagaggtgacgaaatcaca 27234788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 26635774 - 26635821
Alignment:
Q  269 tatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||    
T  26635774 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcat 26635821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 26741740 - 26741787
Alignment:
Q  269 tatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||    
T  26741740 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcat 26741787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 300
Target Start/End: Original strand, 27229136 - 27229347
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||  | |||||||| || |||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  27229136 agttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttc 27229235  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| || |||||||||| |||||| ||||||||||| || || ||   ||||||||||||  | || |||  ||||||||| ||||||  ||||||    
T  27229236 aaagaggagacgaaatcacaccatcactcgtcaaggccattgacgaatctcggatttttattcccatattttctgccaactatgcatcttcttcattttg 27229335  T
Q  289 tttggacgaact 300  Q
    |||| |||||||    
T  27229336 tttgaacgaact 27229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 313
Target Start/End: Original strand, 26861594 - 26861744
Alignment:
Q  163 caccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctct 262  Q
    ||||||||| |||||| | || |||||  |||| |||||||||| |  |||||| | ||| ||||| |||||||| |  ||||| ||||| || || |||    
T  26861594 caccttcatggatgatcgtgaacttcaaagaggggatgaaatcaaaagatcactcgacaatgccattgaagagtctagaattttcattcctgtgttttct 26861693  T
Q  263 atcaactatgcttcttctatattttgtttggacgaacttgtccacatcatt 313  Q
      ||||||||| |||||   |||||||||||| ||||||||||| ||||||    
T  26861694 gccaactatgcctcttcgtcattttgtttggatgaacttgtccaaatcatt 26861744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 27214498 - 27214548
Alignment:
Q  266 aactatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||| ||||    
T  27214498 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcat 27214548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 27234730 - 27234680
Alignment:
Q  266 aactatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||| ||||    
T  27234730 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcat 27234680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 26617269 - 26617350
Alignment:
Q  128 aatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacac 209  Q
    ||||||||||||||| | ||||||   ||| || | |||||||||||||| | |||||||||  ||||||||||||||||||    
T  26617269 aatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacac 26617350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 26723197 - 26723278
Alignment:
Q  128 aatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacac 209  Q
    ||||||||||||||| | ||||||   ||| || | |||||||||||||| | |||||||||  ||||||||||||||||||    
T  26723197 aatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacac 26723278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 28149590 - 28149627
Alignment:
Q  100 cactgacactcgctatggttttactggaaatctctata 137  Q
    |||||||||||||||||||||||||| |||||||||||    
T  28149590 cactgacactcgctatggttttactgaaaatctctata 28149627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 27665232 - 27665173
Alignment:
Q  257 ttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    |||||||  ||||||||| |||||  ||||||||| || |||||||||||||||||||||    
T  27665232 ttctctaagaactatgctacttcttcattttgtttagatgaacttgtccacatcattcat 27665173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 26949745 - 26949791
Alignment:
Q  269 tatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||||||||  ||||||||| |||||||||||||| ||||||||    
T  26949745 tatgcttcttcttcattttgtttagacgaacttgtccatatcattca 26949791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 209
Target Start/End: Original strand, 26811392 - 26811533
Alignment:
Q  68 ttcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcacct 167  Q
    |||| ||||||||| ||| | ||||| ||||| |  |||||||| | ||| || || ||  |||||||||||||| | ||||||   ||| || | ||||    
T  26811392 ttcatctatgacgtgttcattagtttcaggggtatcgacactcgatctggcttcaccggtcatctctataaagctctttgtgacaaaggaatccgaacct 26811491  T
Q  168 tcattgatgatagggagcttcatggaggtgatgaaatcacac 209  Q
    |||||||||| | |||||||||  ||||||| ||||||||||    
T  26811492 tcattgatgacaaggagcttcagagaggtgacgaaatcacac 26811533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 315
Target Start/End: Original strand, 34596 - 34855
Alignment:
Q  56 ttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtg 155  Q
    ||||| |||||||||||||||||||| ||| | |||||||| || | ||||||||||||||||||||| | ||||||||||| |||| | ||| ||   |    
T  34596 ttctcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagg 34695  T
Q  156 gattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggt 255  Q
    || ||  ||||||||||||||| ||||||||||| ||||| |||||||| |||| ||||||| |||||||||| |||||||| | |||||| ||||| ||    
T  34696 gaatccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgt 34795  T
Q  256 cttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||| |||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||    
T  34796 cttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattca 34855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 52 - 316
Target Start/End: Original strand, 27315 - 27579
Alignment:
Q  52 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgac 151  Q
    |||||||||||||||||||||||||||||| ||| | |||||||| || | ||||||||| ||||||||||||||||||||||| |  | | | ||| |     
T  27315 ttccttctcttatggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctacagtgatctttgtaag 27414  T
Q  152 ggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattc 251  Q
       ||| |   ||| ||| |||||||||| |||||||| |||||||||||||| |||  ||||||| |||||| ||| ||||| || | |||||| ||||    
T  27415 aagggaattcacacattctttgatgatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattc 27514  T
Q  252 cggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattcat 316  Q
    | ||||| |||||||| ||||||||||||  |||||| |||||||||||||||||||||||||||    
T  27515 ctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcat 27579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 52 - 315
Target Start/End: Original strand, 42833 - 43096
Alignment:
Q  52 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgac 151  Q
    |||| |||| ||||| || |||||||| || ||| | |||||||| || | ||||||||| ||||||||||||||||||||||| |||| | | ||| |     
T  42833 ttccctctcctatgggtttacctatgatgtcttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaag 42932  T
Q  152 ggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattc 251  Q
       ||| |  |||||||||||||||| || || ||||  ||||||||  |||| |||| ||||||| |||||||||| |||||||| | |||||| ||||    
T  42933 aagggaattcgcaccttcattgatgacagagaacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattc 43032  T
Q  252 cggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    | ||||| |||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||    
T  43033 ctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattca 43096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 52 - 315
Target Start/End: Original strand, 116663 - 116926
Alignment:
Q  52 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgt-ga 150  Q
    |||||| || |||||||||||||||||||| ||| | |||||||| || | ||||||||| ||||||||||||||||||||||| |||| | | ||| |     
T  116663 ttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtagg 116762  T
Q  151 cggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttatt 250  Q
      | | |||| | |||||||||||||| |  || |||||  ||||||| ||||| ||||  |||||| |||||||||| |||||||| | |||||| |||    
T  116763 aagagaattc-gtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggattttcatt 116861  T
Q  251 ccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||  | || |||||||| ||||||||||||   ||||| ||||| |||||||||||||| |||||    
T  116862 cctattttgtctatcaattatgcttcttcttccttttgcttggatgaacttgtccacattattca 116926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 52 - 315
Target Start/End: Complemental strand, 58602 - 58339
Alignment:
Q  52 ttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgac 151  Q
    ||||||||| ||||||||||||||| |||| ||| | || ||||| ||   ||||||||||||||||||||||||||||||||| | |||| | ||||||    
T  58602 ttccttctcctatggattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctacagagctctttgtgac 58503  T
Q  152 ggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattc 251  Q
       ||| || | |||||||| ||||| || |||||||| |||||||| ||||| |||| ||||||| ||||||||||  ||||||| | |||||| ||||    
T  58502 aagggaatccgaaccttcatggatgacagagagcttcaaggaggtgacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattc 58403  T
Q  252 cggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    | ||||| |||||||||||||||||||||  |||||| ||| ||||||||||||||||||||||    
T  58402 ccgtcttgtctatcaactatgcttcttcttcattttgcttgaacgaacttgtccacatcattca 58339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 268553 - 268401
Alignment:
Q  163 caccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctct 262  Q
    |||||||||||||||| | || |||||  |||| |||||||||| || |||||| | ||| ||||| |||||||| | |||||||||||| || || |||    
T  268553 caccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatttttattcctgtgttttct 268454  T
Q  263 atcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  268453 atcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattca 268401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 28164479 - 28164406
Alignment:
Q  242 atttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||||||| || || |||||||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  28164479 atttttattcctgtgttatctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattca 28164406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 201 - 315
Target Start/End: Complemental strand, 28127837 - 28127723
Alignment:
Q  201 aaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaact 300  Q
    |||||||||  |||||| | |||||||| ||||| || |  ||||||||||| || || |||| ||||||||| ||||||  ||||||||||||||||||    
T  28127837 aaatcacaccgtcacttttaaaggccattgaagaatctagaatttttattcctgtattttctaccaactatgcctcttcttcattttgtttggacgaact 28127738  T
Q  301 tgtccacatcattca 315  Q
    ||| |||||||||||    
T  28127737 tgtgcacatcattca 28127723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 315
Target Start/End: Complemental strand, 3705 - 3478
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||  | |||||||| ||||||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  3705 agttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttc 3606  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaac-tatgcttcttctatatttt 287  Q
    |  |||| ||||||||||||| ||||||  |||||||||| || || || | |||||||||||| || || ||||||||| ||||| ||||||  |||||    
T  3605 aaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaacctatgcctcttcttcatttt 3506  T
Q  288 gtttggacgaacttgtccacatcattca 315  Q
    ||||||||||||||||||||||||||||    
T  3505 gtttggacgaacttgtccacatcattca 3478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 89 - 315
Target Start/End: Complemental strand, 14638 - 14413
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||  | |||||||| ||||||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  14638 agttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttc 14539  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| ||||||||||||| ||||||  |||||||||| || || || | |||||||||||| || || |||||||||||||| | ||||   |||||    
T  14538 aaagaggagatgaaatcacaccatcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcct-ttcttcgttttg 14440  T
Q  289 tttggacgaacttgtccacatcattca 315  Q
    ||||||||||||||||||||| |||||    
T  14439 tttggacgaacttgtccacataattca 14413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 7429 - 7656
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||| | |||||||| || |||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  7429 agttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttc 7528  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| ||||||||||||| ||||||  |||||||||||||||| || | |||||||||||| || || ||||||||||| ||  |||| | ||||||    
T  7529 aaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttg 7628  T
Q  289 tttggacgaacttgtccacatcattcat 316  Q
     |||||||||||||| ||||| ||||||    
T  7629 cttggacgaacttgttcacattattcat 7656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 316
Target Start/End: Complemental strand, 13915 - 13688
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||| | |||||||| || |||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  13915 agttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttc 13816  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| ||||||||||||| ||||||  |||||||||||||||| || | |||||||||||| || || ||||||||||| ||  |||| | ||||||    
T  13815 aaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttg 13716  T
Q  289 tttggacgaacttgtccacatcattcat 316  Q
     |||||||||||||| ||||| ||||||    
T  13715 cttggacgaacttgttcacattattcat 13688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 89 - 315
Target Start/End: Complemental strand, 4954 - 4728
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    ||||||||||||| |||||||||| | |||||||| ||||||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  4954 agttttaggggcattgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttc 4855  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttg 288  Q
    |  |||| ||||||||||||| ||| ||   ||||||||| || || || | |||||||||||| || || ||||||  |||||| | ||||   |||||    
T  4854 aaagaggagatgaaatcacaccatccctccgcaaggccattgatgaatctaggatttttattcctgtgttttctatcttctatgccttttcttcgttttg 4755  T
Q  289 tttggacgaacttgtccacatcattca 315  Q
    ||||||||||||||||||||| |||||    
T  4754 tttggacgaacttgtccacataattca 4728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 29273979 - 29273827
Alignment:
Q  163 caccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctct 262  Q
    |||||||||||||||| | || |||||  |||| |||||||||| |  |||||| | ||| | ||| |||||||| |  ||||||||||| || || |||    
T  29273979 caccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaatcatcactcgacaatgtcattgaagagtctagaatttttattcctgtgttttct 29273880  T
Q  263 atcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  29273879 atcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattca 29273827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 31903727 - 31903808
Alignment:
Q  61 ttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagct 142  Q
    ||||||||||||||| || || ||| | || ||||| |||   |||||||||||||||||||||||||||||||| ||||||    
T  31903727 ttatggattcacctacgatgtgttcctcagctttagaggcttagacactcgctatggttttactggaaatctctacaaagct 31903808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 18679763 - 18679611
Alignment:
Q  163 caccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctct 262  Q
    |||||||||||||||  | || || ||  |||| |||||||||| || |||||| | ||| ||||| |||||||| | ||| || ||||| || || |||    
T  18679763 caccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttct 18679664  T
Q  263 atcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  18679663 atcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattca 18679611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 163 - 312
Target Start/End: Complemental strand, 18731700 - 18731551
Alignment:
Q  163 caccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctct 262  Q
    |||||||||||||||  | || || ||  |||| |||||||||| || |||||| | ||| ||||| |||||||| | ||| || ||||| || || |||    
T  18731700 caccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttct 18731601  T
Q  263 atcaactatgcttcttctatattttgtttggacgaacttgtccacatcat 312  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  18731600 atcaactatgcctcttcttcattttgtttggacgaacttgtccacatcat 18731551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 18655673 - 18655521
Alignment:
Q  163 caccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctct 262  Q
    |||||||||||||||  | ||||| ||  | || |||||||||| || |||||| | ||| |||||  ||||||| | ||| |||||||| || || |||    
T  18655673 caccttcattgatgaccgtgagctgcaaagtggggatgaaatcaaaccatcactcgacaatgccattcaagagtctaggatctttattcctgtgttttct 18655574  T
Q  263 atcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||||||||||| ||||||  ||||||||||||||||||||||| |||||||||    
T  18655573 atcaactatgcctcttcttcattttgtttggacgaacttgtccgcatcattca 18655521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 315
Target Start/End: Complemental strand, 18699664 - 18699444
Alignment:
Q  95 aggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttcatggag 194  Q
    |||||||||||||||||  | |||||||||||  ||||||| |||||| |   ||||   ||| ||  |||||||||||||||  | || || ||  | |    
T  18699664 aggggcactgacactcgtgacggttttactggccatctctacaaagctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagtg 18699565  T
Q  195 gtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgtttgga 294  Q
    | |||||||||| || |||||| | ||| ||||| |||||||| | ||| || ||||| || || |||||||||||||| ||||||  ||||||||||||    
T  18699564 gggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttgga 18699465  T
Q  295 cgaacttgtccacatcattca 315  Q
    ||||||||| |||||||||||    
T  18699464 cgaacttgttcacatcattca 18699444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 312
Target Start/End: Complemental strand, 18724281 - 18724132
Alignment:
Q  163 caccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctct 262  Q
    |||||||||||||||  | || || ||  |||| |||||||||| || |||||| | ||| ||||| |||||||| | ||| || ||||| || || |||    
T  18724281 caccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttct 18724182  T
Q  263 atcaactatgcttcttctatattttgtttggacgaacttgtccacatcat 312  Q
    ||||||||||| ||||||  |||||||||| |||||||||||||||||||    
T  18724181 atcaactatgcctcttcttcattttgtttgaacgaacttgtccacatcat 18724132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 315
Target Start/End: Complemental strand, 5091284 - 5091011
Alignment:
Q  42 catctttcttttccttctcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctataaagc 141  Q
    |||||| || ||| ||||| || ||||| ||||| ||||| ||  | |||||||| ||||| |||||||| || ||||||||||||||||||||| ||||    
T  5091284 catcttcctcttctttctcctacggatttacctacgacgtctttcttagttttagaggcaccgacactcgttacggttttactggaaatctctatgaagc 5091185  T
Q  142 tttatgtgacggtggattctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatg 241  Q
    | || ||| |   ||| |   ||||||||||||||| || ||||||||  |||| ||  |||| ||||  |||||| ||||||||||  |||| || | |    
T  5091184 tctacgtgtcaagggaattcacaccttcattgatgacagagagcttcagcgaggagaccaaataacaccgtcacttctcaaggccattcaagaatctaag 5091085  T
Q  242 atttttattccggtcttctctatcaactatgcttcttctatattttgtttggacgaacttgtccacatcattca 315  Q
    ||| | |||   || ||||||| | ||||||||||||||   |||||||| || ||||||||||| || |||||    
T  5091084 attgtcattatcgttttctctaaccactatgcttcttcttcgttttgtttagatgaacttgtccatattattca 5091011  T

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Target: scaffold1254 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 270
Target Start/End: Complemental strand, 200 - 19
Alignment:
Q  89 agttttaggggcactgacactcgctatggttttactggaaatctctataaagctttatgtgacggtggattctgcaccttcattgatgatagggagcttc 188  Q
    |||||||||||||||||||||||| | |||||||| || |||||||| || ||| |   ||||   ||| ||   |||||||||||||| |  || ||||    
T  200 agttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttc 101  T
Q  189 atggaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaacta 270  Q
    |  |||| ||||||||||||| ||||||  |||||||||||||||| || | |||||||||||| || || |||||||||||    
T  100 aaagaggagatgaaatcacaccatcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaacta 19  T

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