View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_29 (Length: 317)
Name: NF1243_high_29
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 107 - 290
Target Start/End: Original strand, 46626870 - 46627048
Alignment:
| Q |
107 |
tggttttattatttatttatctttttacgtaaaatgcaccattagttgtgaattgtgatatacacatctcgtattttgattgtgtgaaattaattgcatt |
206 |
Q |
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| T |
46626870 |
tggttttattatttatttatctttttacgtaaaatgcaccattagttgtgaattgtgatatacacatctcgtattttgattgtgtgaaatta-----att |
46626964 |
T |
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| Q |
207 |
gcattgacttggaatcttggatattggtattttgttcaaaaatgttaattacttacaacatatattgtcatcaatattctttct |
290 |
Q |
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| T |
46626965 |
gcattgacttggaatcttggatattggtattttgttcaaaaatgataattacttacaacatatattgtcatcaatattctttct |
46627048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 46640888 - 46640993
Alignment:
| Q |
87 |
cgtgaagatgtatgaaccattggttttattatttatttatctttttacgtaaaatgcaccattagttgtgaattgtgatatacacatctcgtattttgat |
186 |
Q |
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| T |
46640888 |
cgtgaagatgtatgtatcattagttttattatttatttatctttttacg-aaaatgtaccattagttgtgacttgtgatatacacatctggtattttgat |
46640986 |
T |
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| Q |
187 |
tgtgtga |
193 |
Q |
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| T |
46640987 |
tgcgtga |
46640993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 46626828 - 46626871
Alignment:
| Q |
47 |
ataaaaggataaataacacttcaaatttacttgattgtaacgtg |
90 |
Q |
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| T |
46626828 |
ataaaaggataaataaccattcaaatttacttgattgtaacgtg |
46626871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 267
Target Start/End: Complemental strand, 18380346 - 18380165
Alignment:
| Q |
74 |
tacttgattgtaacgtgaagatgtatgaaccattggttttattatttatttatctttttacgtaaaatgcaccattagttgtgaattgtgatat------ |
167 |
Q |
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| T |
18380346 |
tacttgactgtaacgtgaagatgtatgcaccattggttttattatttattta----tttatgtatcttttagaa--agttgtgaattgtgatatacacat |
18380253 |
T |
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| Q |
168 |
-acacatctcgtattttgattgtgtgaaattaattgcattgcattgacttggaatcttggatattggtattttgttcaaaaatgttaattacttacaaca |
266 |
Q |
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| T |
18380252 |
aacacatctggtattttgattgtgtgaaattaattgcattg-------------acttggatattggtattttgttcaaaaatgataattacttacaaca |
18380166 |
T |
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