View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_3 (Length: 540)
Name: NF1243_high_3
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 2 - 534
Target Start/End: Original strand, 44109285 - 44109816
Alignment:
| Q |
2 |
tgaagtgtaatagttggaggttggtaataactgtcagcatctcaagaaataatttgcctcttcaaaactatatgtctcacaaagttggatgaaagtgatt |
101 |
Q |
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| T |
44109285 |
tgaagtgtaatagttggaggttggtaataactgtctgcatctcaagaaataatttgcctcttcaaagctatatgtctctcaaagttggatgaaagtgatt |
44109384 |
T |
|
| Q |
102 |
tggatttttgtaataactgtacagaatgcaaaacatcaatgtggatctgtatcaacatgttatggcatgtttctccttattcagttgtgctattgagtgg |
201 |
Q |
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| T |
44109385 |
tgaatttttgtaataactgtacagaatgcaaaacatcaatgtggatctgtatcaacctgttatggcatgtttctccttattcagttgtgctattgagtgg |
44109484 |
T |
|
| Q |
202 |
acttgcaagtgtcaagtctctcgcactatcagcgaacgctttgaaggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgta |
301 |
Q |
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| T |
44109485 |
acttgcaagtgtcaagtctctcgcactatcagcaaacgctttgaaggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgta |
44109584 |
T |
|
| Q |
302 |
taatataatgcgtattgatgcgcaatgttgcctttagttgtgtttcccatgcaaatctatttctgttacannnnnnnnagtatccatacgatgcaattga |
401 |
Q |
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| T |
44109585 |
taatataatgtgtattgatgcgcaatgttgcctttagttgtgtttcccatgcaaatctatttctgtttca-tttttttaggatcctctctatgcaattga |
44109683 |
T |
|
| Q |
402 |
tcatctccatctccttcccgagttccacaattggacacatcattgtctgcatcggaggattaatcctttcactagaaaaacaatactggaattcctctta |
501 |
Q |
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| T |
44109684 |
tcatctccatctccttcccgagttccacaatttgacacatctttgtctgcatcggaggattaaacctttcactataaaaacagtactggaattcctctta |
44109783 |
T |
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| Q |
502 |
aggtgtcctaaactggaaactcttgttgttcct |
534 |
Q |
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| T |
44109784 |
aggtgtcctaaactggaaactcttgttgttcct |
44109816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 247 - 534
Target Start/End: Original strand, 40276437 - 40276725
Alignment:
| Q |
247 |
ggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatata-----atgcgtattgatgcgcaatgttgcctttagttg |
341 |
Q |
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| T |
40276437 |
ggtatgtattgtcttttttctgaacatcttcatttatctttttaaatattgtgtataatataataagatgcgtattgacgcacaatgttgcctttggctg |
40276536 |
T |
|
| Q |
342 |
tgtttcccatgcaaatctatttctgttacannnnnnnnagtatccatacgatgcaattgatcatctccatctccttcccgagttccacaattggacacat |
441 |
Q |
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| T |
40276537 |
tgtttcccatgcaagtctattgttgtttc-cttttactaggaacctctctatgtaattgatcatctccatccccttcctgagctccacaatttgacacat |
40276635 |
T |
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| Q |
442 |
cattgtctgcatcggaggattaatcctttcactagaaaaacaatactggaattcctcttaaggtgtcctaaactggaaactcttgttgttcct |
534 |
Q |
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| T |
40276636 |
ctttgtctggatttggagatt-atc--ttcagtagaaaaacattaatggaattcctcttaaggtgtcctaaattggaagctcttgtttttcct |
40276725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 173 - 304
Target Start/End: Complemental strand, 40450897 - 40450765
Alignment:
| Q |
173 |
tctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcgaacgctttgaaggtatgtattatcttttatctgatca |
272 |
Q |
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| T |
40450897 |
tctccttattcggttgtgctactgagtggacttgcaagtgtcaagtctcttacactatcaaaggacacttttagggtatgtattaccttttctctcatca |
40450798 |
T |
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| Q |
273 |
tcatcattt-atctttttaaatattgtgtataa |
304 |
Q |
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| T |
40450797 |
tcttcatttaatctttttaaatattgtgtataa |
40450765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 396 - 528
Target Start/End: Complemental strand, 40450703 - 40450574
Alignment:
| Q |
396 |
aattgatcatctccatctccttcccgagttccacaattggacacatcattgtctg-catcggaggattaatcctttcactagaaaaacaatactggaatt |
494 |
Q |
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| T |
40450703 |
aattgatcatctccatctccttcctgagttccacaatttgacacatctttgtctgactttgga-gattga---cttcagtagaaaaacattaatggaatt |
40450608 |
T |
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| Q |
495 |
cctcttaaggtgtcctaaactggaaactcttgtt |
528 |
Q |
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| T |
40450607 |
tctcctaaggtgtcctaaactggaagcacttgtt |
40450574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 43760251 - 43760320
Alignment:
| Q |
59 |
ctcttcaaaactatatgtctcacaaagttggatgaaagtgatttggatttttgtaataactgtacagaat |
128 |
Q |
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| T |
43760251 |
ctcttcaaagctatctgcctctcaaagtttgatgaaagtgatttgaatttttgtaataactgaacagaat |
43760320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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