View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1243_high_30 (Length: 306)
Name: NF1243_high_30
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 36057518 - 36057252
Alignment:
| Q |
11 |
caaaggcaagtgcacaatcaattcttcatgaaactctaacttcaatgtcttgagttttgatgcgagattagacatttctataagtactcccttatgtttc |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36057518 |
caaagccaagtgcacaatcaattcttcatgaaactctaacttcaatgtcttgagttttgatgcgagattagacatttctataagtactcccttatgtttc |
36057419 |
T |
|
| Q |
111 |
atttacctttataaattcattgaaatgagcttaaataaaacactacttatctcaaccttatcattcttgaaaaagaattgctatgtggtttaaaagaact |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36057418 |
atttacctttataaattcattgaaatgagcttaaataaaacactacttatctcaaccttatcattcttgaaaaagaattgctatgtggtttaaaagaact |
36057319 |
T |
|
| Q |
211 |
ttttgaaactttcgctctcaggaatcgagcccctaatcacttcaggtatggatctcttgataattac |
277 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36057318 |
ttttgaaactttcgctctcaggaatcgaacccctaatcacttcaggtatggatctcttgataattac |
36057252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 28723808 - 28723708
Alignment:
| Q |
21 |
tgcacaatcaattcttcatgaaactctaacttcaatgtcttgagttttgatgcgagattagacattt-ctataagtactcccttatgtttcatttacctt |
119 |
Q |
| |
|
|||||||| || |||||| ||| |||||||||| || ||||||||||||||||||||||||||||| | ||| ||||||||||||||| | |||||||| |
|
|
| T |
28723808 |
tgcacaattaaatcttcaggaagttctaacttcagtgccttgagttttgatgcgagattagacatttccaatatgtactcccttatgttccctttacctt |
28723709 |
T |
|
| Q |
120 |
t |
120 |
Q |
| |
|
| |
|
|
| T |
28723708 |
t |
28723708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 23070341 - 23070502
Alignment:
| Q |
17 |
caagtgcacaatcaattcttcatgaaactctaacttcaatgtcttgagttttgatgcgagattagacatttct-ataagtactcccttatgtttcattta |
115 |
Q |
| |
|
|||||||||||| || |||||| ||| ||||| ||| || ||||||||| | || ||||||||||||||| | | ||| ||||||||||| | |||| |
|
|
| T |
23070341 |
caagtgcacaattaaatcttcaagaagttctaaattccgtgccttgagtttgaaggcaagattagacatttctaagatgtattcccttatgttcccttta |
23070440 |
T |
|
| Q |
116 |
cctttataaattcattgaaatgagcttaaataaaacactacttatctcaaccttatcattctt |
178 |
Q |
| |
|
||||| | | |||||||||| || || |||||||| |||| | ||||||||||||||||| |
|
|
| T |
23070441 |
cctttgt-agctcattgaaataagtttggataaaacaatactagtttcaaccttatcattctt |
23070502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University