View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_high_35 (Length: 290)

Name: NF1243_high_35
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_high_35
NF1243_high_35
[»] chr4 (12 HSPs)
chr4 (26-227)||(3754502-3754715)
chr4 (115-227)||(9927926-9928053)
chr4 (116-165)||(12745958-12746007)
chr4 (117-165)||(12740080-12740128)
chr4 (117-165)||(12748286-12748334)
chr4 (167-227)||(12740004-12740064)
chr4 (167-227)||(12748210-12748270)
chr4 (114-154)||(29254139-29254179)
chr4 (194-229)||(54200348-54200383)
chr4 (215-261)||(3754724-3754770)
chr4 (194-227)||(6655408-6655441)
chr4 (166-227)||(12745882-12745943)
[»] chr5 (8 HSPs)
chr5 (117-165)||(32636402-32636450)
chr5 (194-233)||(11181417-11181456)
chr5 (193-227)||(28751047-28751081)
chr5 (117-165)||(28751126-28751174)
chr5 (166-227)||(42428883-42428946)
chr5 (115-144)||(19634110-19634139)
chr5 (117-153)||(37438724-37438760)
chr5 (195-227)||(42426700-42426732)
[»] chr7 (10 HSPs)
chr7 (115-161)||(4585737-4585783)
chr7 (166-227)||(47676601-47676664)
chr7 (115-153)||(14070387-14070425)
chr7 (115-153)||(14380415-14380453)
chr7 (166-227)||(27347564-27347627)
chr7 (194-229)||(48491269-48491304)
chr7 (193-227)||(4796234-4796268)
chr7 (169-227)||(47674408-47674468)
chr7 (168-227)||(4585804-4585864)
chr7 (194-226)||(48489100-48489132)
[»] chr1 (4 HSPs)
chr1 (116-165)||(30476969-30477018)
chr1 (194-229)||(37033750-37033785)
chr1 (193-227)||(37879574-37879608)
chr1 (194-230)||(49918019-49918055)
[»] chr8 (7 HSPs)
chr8 (167-227)||(15212427-15212489)
chr8 (166-227)||(33351811-33351874)
chr8 (194-227)||(4733495-4733528)
chr8 (194-227)||(30143012-30143045)
chr8 (194-227)||(42435674-42435707)
chr8 (194-227)||(43036093-43036126)
chr8 (194-226)||(1345836-1345868)
[»] chr3 (6 HSPs)
chr3 (168-227)||(29812705-29812766)
chr3 (166-227)||(29810508-29810571)
chr3 (194-227)||(44331239-44331272)
chr3 (194-227)||(44331912-44331945)
chr3 (172-226)||(55302648-55302703)
chr3 (166-227)||(51398466-51398529)
[»] scaffold0286 (1 HSPs)
scaffold0286 (194-227)||(11010-11043)
[»] chr6 (2 HSPs)
chr6 (194-227)||(22964196-22964229)
chr6 (194-227)||(23824164-23824197)
[»] chr2 (4 HSPs)
chr2 (116-153)||(17863770-17863807)
chr2 (194-227)||(36318475-36318508)
chr2 (194-227)||(38312025-38312058)
chr2 (195-227)||(2837309-2837341)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 3754502 - 3754715
Alignment:
Q  26 atttcagaagaccgactaagggggatatatagtccaaannnnnnnggaaaggtttgaggttaatgaggaatgctattttgttcaaaggtattgttgtgta 125  Q
    |||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  3754502 atttcagaagactgactaagggggatatatagtccaaatttttttggaaaggtttgaggttaatgaggaatgctatt--gttcaaatgtattgttgtgta 3754599  T
Q  126 tgtcttcaaatttgtgaagttaagaatgacaagaatcgtg--------------gcgtgtcacgattttctagacaatgaattgttttgcagggtgttca 211  Q
    ||||||||||||||||||||| ||||||||||||||||||              || |||||||||||| ||||||||||  ||||||||||||||| ||    
T  3754600 tgtcttcaaatttgtgaagttgagaatgacaagaatcgtgacacgatttaacaagcatgtcacgattttttagacaatgagctgttttgcagggtgtaca 3754699  T
Q  212 atcgtgacacgatttt 227  Q
    || || ||||||||||    
T  3754700 attgtaacacgatttt 3754715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 9928053 - 9927926
Alignment:
Q  115 attgttgtgtatgtcttcaaatttgtgaagttaagaatgacaagaatcgtg--------------gcgtgtcacgattttctagacaatgaa-ttgtttt 199  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||              |||| |||||||||||||| || ||||  ||||||    
T  9928053 attgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtgacacaatttaacaagcgtatcacgattttctaggcagtgaacatgtttt 9927954  T
Q  200 gcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||||||||||||||||    
T  9927953 gcagggtgttcaatcgtgacacgatttt 9927926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 12746007 - 12745958
Alignment:
Q  116 ttgttgtgtatgtcttcaaatttgtgaagttaagaatgacaagaatcgtg 165  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  12746007 ttgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtg 12745958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 12740128 - 12740080
Alignment:
Q  117 tgttgtgtatgtcttcaaatttgtgaagttaagaatgacaagaatcgtg 165  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  12740128 tgttgtgtatgccttcaaatttgtgaagttgagaatgataagaatcgtg 12740080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 12748334 - 12748286
Alignment:
Q  117 tgttgtgtatgtcttcaaatttgtgaagttaagaatgacaagaatcgtg 165  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  12748334 tgttgtgtatgccttcaaatttgtgaagttgagaatgataagaatcgtg 12748286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 12740064 - 12740004
Alignment:
Q  167 cgtgtcacgattttctagacaatgaattgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    |||||||||||||||||| || |||  ||||||||||||||| ||| || |||||||||||    
T  12740064 cgtgtcacgattttctaggcactgagctgttttgcagggtgtccaaccgcgacacgatttt 12740004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 12748270 - 12748210
Alignment:
Q  167 cgtgtcacgattttctagacaatgaattgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    |||||||||||||||||| || |||  ||||||||||||||| ||| || |||||||||||    
T  12748270 cgtgtcacgattttctaggcactgagctgttttgcagggtgtccaaccgcgacacgatttt 12748210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 29254139 - 29254179
Alignment:
Q  114 tattgttgtgtatgtcttcaaatttgtgaagttaagaatga 154  Q
    |||||||||||||||||||||| |||||||||| |||||||    
T  29254139 tattgttgtgtatgtcttcaaacttgtgaagttgagaatga 29254179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 54200383 - 54200348
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgattttcg 229  Q
    ||||||||||||||| ||||||||||||||||||||    
T  54200383 tgttttgcagggtgtccaatcgtgacacgattttcg 54200348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 3754724 - 3754770
Alignment:
Q  215 gtgacacgattttcgatttattgaggatatattaaatatctcattga 261  Q
    ||||||||||||| | ||| ||||||| |||||||||||||||||||    
T  3754724 gtgacacgatttttggtttgttgaggagatattaaatatctcattga 3754770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 6655408 - 6655441
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||| ||||||||||||||||||    
T  6655408 tgttttgcagggtgtccaatcgtgacacgatttt 6655441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 12745943 - 12745882
Alignment:
Q  166 gcgtgtcacgattttctagacaatgaattgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||| ||||||||||||| || |||  ||||| ||||||||| ||||||||||| ||||||    
T  12745943 gcgtgacacgattttctaggcagtgagctgtttggcagggtgtccaatcgtgacatgatttt 12745882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 32636402 - 32636450
Alignment:
Q  117 tgttgtgtatgtcttcaaatttgtgaagttaagaatgacaagaatcgtg 165  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  32636402 tgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaatcgtg 32636450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 11181417 - 11181456
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgattttcgattt 233  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  11181417 tgttttgcagggtgtccaatcgtgacacgattttcgattt 11181456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 28751081 - 28751047
Alignment:
Q  193 ttgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    |||||||||||||||||||||||||||||||||||    
T  28751081 ttgttttgcagggtgttcaatcgtgacacgatttt 28751047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 28751174 - 28751126
Alignment:
Q  117 tgttgtgtatgtcttcaaatttgtgaagttaagaatgacaagaatcgtg 165  Q
    |||||||||||||||||||||||| ||||| ||||||  ||||||||||    
T  28751174 tgttgtgtatgtcttcaaatttgtaaagttgagaatgtaaagaatcgtg 28751126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 42428946 - 42428883
Alignment:
Q  166 gcgtgtcacgattttctagacaatga--attgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    |||||||||||||||||||  | |||  || |||||||||||||| ||||||||||||||||||    
T  42428946 gcgtgtcacgattttctaggaagtgagcatggttttgcagggtgtccaatcgtgacacgatttt 42428883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 19634110 - 19634139
Alignment:
Q  115 attgttgtgtatgtcttcaaatttgtgaag 144  Q
    ||||||||||||||||||||||||||||||    
T  19634110 attgttgtgtatgtcttcaaatttgtgaag 19634139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 37438724 - 37438760
Alignment:
Q  117 tgttgtgtatgtcttcaaatttgtgaagttaagaatg 153  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  37438724 tgttgtatatgtcttcaaatttgtgaagttgagaatg 37438760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 42426732 - 42426700
Alignment:
Q  195 gttttgcagggtgttcaatcgtgacacgatttt 227  Q
    |||||||||||||| ||||||||||||||||||    
T  42426732 gttttgcagggtgtccaatcgtgacacgatttt 42426700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 4585737 - 4585783
Alignment:
Q  115 attgttgtgtatgtcttcaaatttgtgaagttaagaatgacaagaat 161  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  4585737 attgttgtgtatgtcttcaaatttgtgaagttgagaatgataagaat 4585783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 47676664 - 47676601
Alignment:
Q  166 gcgtgtcacgattttctagacaatga--attgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||||||| || |||  || |||||||||||||| ||||||||||||||||||    
T  47676664 gcgtgtcacgattttctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgatttt 47676601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 14070425 - 14070387
Alignment:
Q  115 attgttgtgtatgtcttcaaatttgtgaagttaagaatg 153  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  14070425 attgttgtgtatgtcttcaaatttgtgaagttgagaatg 14070387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 14380453 - 14380415
Alignment:
Q  115 attgttgtgtatgtcttcaaatttgtgaagttaagaatg 153  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  14380453 attgttgtgtatgtcttcaaatttgtgaagttgagaatg 14380415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 27347564 - 27347627
Alignment:
Q  166 gcgtgtcacgattttctagacaatga--attgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||||||| || |||  | ||||||||||||||  ||||||||||||||||||    
T  27347564 gcgtgtcacgattttctaggcagtgagcactgttttgcagggtgcccaatcgtgacacgatttt 27347627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 48491269 - 48491304
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgattttcg 229  Q
    ||||||||||||||| ||||||||||||||||||||    
T  48491269 tgttttgcagggtgtccaatcgtgacacgattttcg 48491304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 4796234 - 4796268
Alignment:
Q  193 ttgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||| |||||||||||||||||||    
T  4796234 ttgttttgcagggtgctcaatcgtgacacgatttt 4796268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 47674468 - 47674408
Alignment:
Q  169 tgtcacgattttctagacaatga--attgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||| || || |||  || |||||||||||||| ||||||||||||||||||    
T  47674468 tgtcacgattttccaggcagtgagcatggttttgcagggtgtccaatcgtgacacgatttt 47674408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 4585804 - 4585864
Alignment:
Q  168 gtgtcacgattttctagacaatgaat-tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||||| || |||   ||||||||||||||| |||||||||||| |||||    
T  4585804 gtgtcacgattttctaggcagtgagcatgttttgcagggtgtccaatcgtgacactatttt 4585864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 48489100 - 48489132
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgattt 226  Q
    ||||||||||||||||||| |||||||||||||    
T  48489100 tgttttgcagggtgttcaaccgtgacacgattt 48489132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 30477018 - 30476969
Alignment:
Q  116 ttgttgtgtatgtcttcaaatttgtgaagttaagaatgacaagaatcgtg 165  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||||||||    
T  30477018 ttgttgtgtatgtcttcaaaattgtgaagttgagaatgataagaatcgtg 30476969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 37033785 - 37033750
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgattttcg 229  Q
    ||||||||||||||| ||||||||||||||||||||    
T  37033785 tgttttgcagggtgtccaatcgtgacacgattttcg 37033750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 37879608 - 37879574
Alignment:
Q  193 ttgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||| |||||||||||||||||||    
T  37879608 ttgttttgcagggtgctcaatcgtgacacgatttt 37879574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 49918019 - 49918055
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgattttcga 230  Q
    ||||||||||||||  |||||||||||||||||||||    
T  49918019 tgttttgcagggtgcccaatcgtgacacgattttcga 49918055  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 15212427 - 15212489
Alignment:
Q  167 cgtgtcacgattttctagacaatga--attgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    |||||||||||||||||| || |||  || |||||||||||||| ||||||||||||||||||    
T  15212427 cgtgtcacgattttctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgatttt 15212489  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 33351811 - 33351874
Alignment:
Q  166 gcgtgtcacgattttctagacaatgaa--ttgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||| ||| || ||||  | |||||||||||||| ||||||||||||||||||    
T  33351811 gcgtgtcacgattttttaggcagtgaacatggttttgcagggtgtccaatcgtgacacgatttt 33351874  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 4733495 - 4733528
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    |||||| |||||||||||||||||||||||||||    
T  4733495 tgttttccagggtgttcaatcgtgacacgatttt 4733528  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 30143012 - 30143045
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||| ||||||||||||||||||    
T  30143012 tgttttgcagggtgtccaatcgtgacacgatttt 30143045  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 42435707 - 42435674
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||| ||||||||||||||||||    
T  42435707 tgttttgcagggtgtccaatcgtgacacgatttt 42435674  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 43036093 - 43036126
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||| ||||||||||||||||||    
T  43036093 tgttttgcagggtgtccaatcgtgacacgatttt 43036126  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 1345868 - 1345836
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgattt 226  Q
    |||| ||||||||||||||||||||||||||||    
T  1345868 tgttctgcagggtgttcaatcgtgacacgattt 1345836  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 29812705 - 29812766
Alignment:
Q  168 gtgtcacgattttctagacaatga--attgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||||| || |||  || |||||||||||||| ||||||||||||||||||    
T  29812705 gtgtcacgattttctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgatttt 29812766  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 29810508 - 29810571
Alignment:
Q  166 gcgtgtcacgattttctagacaatga--attgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||| ||||||||| || |||  || |||||||||||||| ||||||||||||||||||    
T  29810508 gcgtgtcacaattttctaggcattgagcatggttttgcagggtgtccaatcgtgacacgatttt 29810571  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 44331239 - 44331272
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    |||||||| |||||||||||||||||||||||||    
T  44331239 tgttttgctgggtgttcaatcgtgacacgatttt 44331272  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 44331945 - 44331912
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||| ||||||||||||||||||    
T  44331945 tgttttgcagggtgtccaatcgtgacacgatttt 44331912  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 55302703 - 55302648
Alignment:
Q  172 cacgattttctagacaatga--attgttttgcagggtgttcaatcgtgacacgattt 226  Q
    ||||||||||||| || |||  |||||||| ||||||||||||||||||||||||||    
T  55302703 cacgattttctaggcagtgagcattgtttt-cagggtgttcaatcgtgacacgattt 55302648  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 51398466 - 51398529
Alignment:
Q  166 gcgtgtcacgattttctagacaatga--attgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    |||||||||||||||||||  | |||  || |||||||||||||| |||| |||||||||||||    
T  51398466 gcgtgtcacgattttctaggtagtgagcatggttttgcagggtgtccaattgtgacacgatttt 51398529  T

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Target: scaffold0286 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 11010 - 11043
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||| ||||||||||||||||||    
T  11010 tgttttgcagggtgtccaatcgtgacacgatttt 11043  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 22964229 - 22964196
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||||||||||||| ||||||||    
T  22964229 tgttttgcagggtgttcaatcgtgatacgatttt 22964196  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 23824164 - 23824197
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||||||||||||| ||||||||    
T  23824164 tgttttgcagggtgttcaatcgtgatacgatttt 23824197  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 17863770 - 17863807
Alignment:
Q  116 ttgttgtgtatgtcttcaaatttgtgaagttaagaatg 153  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  17863770 ttgttgtgtatgtcttcaactttgtgaagttgagaatg 17863807  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 36318508 - 36318475
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||| ||||||||||||||||||    
T  36318508 tgttttgcagggtgtccaatcgtgacacgatttt 36318475  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 38312025 - 38312058
Alignment:
Q  194 tgttttgcagggtgttcaatcgtgacacgatttt 227  Q
    ||||||||||||||| ||||||||||||||||||    
T  38312025 tgttttgcagggtgtccaatcgtgacacgatttt 38312058  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 2837341 - 2837309
Alignment:
Q  195 gttttgcagggtgttcaatcgtgacacgatttt 227  Q
    |||||||||||||| ||||||||||||||||||    
T  2837341 gttttgcagggtgtccaatcgtgacacgatttt 2837309  T

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