View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_high_37 (Length: 286)

Name: NF1243_high_37
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_high_37
NF1243_high_37
[»] chr1 (15 HSPs)
chr1 (131-258)||(8236485-8236612)
chr1 (1-115)||(8235858-8235972)
chr1 (127-256)||(15421331-15421461)
chr1 (127-256)||(16527378-16527508)
chr1 (127-256)||(2130180-2130310)
chr1 (127-256)||(12726928-12727058)
chr1 (154-253)||(28553549-28553650)
chr1 (151-256)||(20860418-20860525)
chr1 (151-239)||(20898395-20898483)
chr1 (162-240)||(15346590-15346668)
chr1 (155-240)||(26194496-26194581)
chr1 (151-256)||(20448665-20448772)
chr1 (151-256)||(20534431-20534538)
chr1 (151-204)||(23299146-23299199)
chr1 (151-204)||(52755128-52755181)
[»] chr7 (16 HSPs)
chr7 (127-256)||(14925748-14925878)
chr7 (127-256)||(15349214-15349344)
chr7 (127-256)||(1864535-1864665)
chr7 (153-256)||(15523287-15523391)
chr7 (153-256)||(679219-679323)
chr7 (127-256)||(6847558-6847688)
chr7 (153-256)||(38877664-38877768)
chr7 (131-213)||(11281531-11281613)
chr7 (151-204)||(11483634-11483687)
chr7 (178-256)||(17911869-17911949)
chr7 (151-256)||(30063686-30063793)
chr7 (178-240)||(4465527-4465589)
chr7 (154-204)||(46274356-46274406)
chr7 (158-191)||(11242699-11242732)
chr7 (151-204)||(16897041-16897094)
chr7 (159-191)||(11281615-11281647)
[»] chr4 (18 HSPs)
chr4 (127-256)||(24493177-24493307)
chr4 (127-256)||(21276855-21276985)
chr4 (127-257)||(17465072-17465203)
chr4 (155-256)||(4743044-4743146)
chr4 (153-257)||(17169046-17169151)
chr4 (153-257)||(17174606-17174711)
chr4 (1-114)||(21276456-21276571)
chr4 (153-240)||(9717504-9717591)
chr4 (127-202)||(55267813-55267888)
chr4 (194-256)||(55268073-55268136)
chr4 (151-204)||(10731394-10731447)
chr4 (151-204)||(10945163-10945216)
chr4 (151-240)||(11902368-11902457)
chr4 (142-256)||(11377280-11377395)
chr4 (151-204)||(9857463-9857516)
chr4 (151-204)||(16953689-16953742)
chr4 (142-215)||(29367280-29367353)
chr4 (142-253)||(26493085-26493197)
[»] chr2 (10 HSPs)
chr2 (127-256)||(21511662-21511792)
chr2 (127-256)||(25592847-25592977)
chr2 (127-257)||(21516140-21516271)
chr2 (153-256)||(24371165-24371269)
chr2 (151-240)||(23704534-23704623)
chr2 (155-257)||(24322057-24322161)
chr2 (151-240)||(24177437-24177526)
chr2 (155-256)||(20852387-20852490)
chr2 (151-204)||(23256797-23256850)
chr2 (151-204)||(29577126-29577179)
[»] chr5 (9 HSPs)
chr5 (127-256)||(19222145-19222275)
chr5 (153-256)||(24166521-24166626)
chr5 (153-256)||(23029293-23029397)
chr5 (153-256)||(23114517-23114621)
chr5 (151-240)||(20724591-20724680)
chr5 (147-225)||(42687433-42687511)
chr5 (151-240)||(17408475-17408564)
chr5 (154-204)||(22942619-22942669)
chr5 (151-204)||(22948826-22948879)
[»] scaffold0855 (1 HSPs)
scaffold0855 (153-256)||(3728-3832)
[»] scaffold0847 (1 HSPs)
scaffold0847 (153-256)||(3893-3997)
[»] scaffold0014 (1 HSPs)
scaffold0014 (153-256)||(168452-168556)
[»] chr8 (6 HSPs)
chr8 (127-256)||(9798204-9798334)
chr8 (153-240)||(22904856-22904943)
chr8 (169-256)||(24221276-24221365)
chr8 (127-205)||(17315216-17315293)
chr8 (151-204)||(23455838-23455891)
chr8 (127-205)||(17337127-17337204)
[»] chr6 (15 HSPs)
chr6 (153-252)||(31965241-31965341)
chr6 (153-238)||(20221446-20221531)
chr6 (153-238)||(22115430-22115515)
chr6 (153-256)||(29682866-29682970)
chr6 (142-256)||(17756769-17756884)
chr6 (153-256)||(20225343-20225446)
chr6 (153-256)||(22119327-22119430)
chr6 (156-240)||(18973919-18974003)
chr6 (151-256)||(20464632-20464738)
chr6 (151-237)||(15172481-15172567)
chr6 (151-237)||(15470907-15470993)
chr6 (151-204)||(14992053-14992106)
chr6 (151-204)||(22601131-22601184)
chr6 (175-240)||(24392634-24392699)
chr6 (154-256)||(15162472-15162576)
[»] chr3 (10 HSPs)
chr3 (153-256)||(9774805-9774908)
chr3 (127-225)||(16998922-16999019)
chr3 (153-256)||(9762350-9762453)
chr3 (127-255)||(11271550-11271679)
chr3 (197-256)||(27992213-27992273)
chr3 (151-256)||(11577474-11577581)
chr3 (151-204)||(11827190-11827243)
chr3 (153-195)||(27992496-27992538)
chr3 (162-240)||(40846745-40846823)
chr3 (151-203)||(8532149-8532201)
[»] scaffold0001 (2 HSPs)
scaffold0001 (155-256)||(33138-33241)
scaffold0001 (155-256)||(38445-38548)
[»] scaffold0088 (1 HSPs)
scaffold0088 (151-240)||(38794-38883)
[»] scaffold0102 (1 HSPs)
scaffold0102 (142-240)||(36622-36720)
[»] scaffold0074 (1 HSPs)
scaffold0074 (156-256)||(22461-22563)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 8236485 - 8236612
Alignment:
Q  131 taatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaagg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8236485 taatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaatgtgaagtttaatagttgttatttcatcatctcatatatcaaacaaagg 8236584  T
Q  231 atcgaaagataagtttgatattggaatt 258  Q
    ||||||||||||||||||||||||||||    
T  8236585 atcgaaagataagtttgatattggaatt 8236612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 8235858 - 8235972
Alignment:
Q  1 agatggtttggatgaagtttggacaagaaaagataaaagaatgcatgaagaaaagggtttttccagggagaaacacacgctccgtgcgttttaagcaccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8235858 agatggtttggatgaagtttggacaagaaaagataaaagaatgcatgaagaaaagggtttttccagggagaaacacacgctccgtgcgttttaagcaccc 8235957  T
Q  101 agaccgtgcgtttta 115  Q
    |||||||| ||||||    
T  8235958 agaccgtgtgtttta 8235972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 15421331 - 15421461
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||||||||||  |||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||     
T  15421331 aatctaatttcatcgttttcaaactcagtaacaagtattaaacgaaggaccgaaaggtgaagtttaatagttgttatttcatcatctcaaatatgaaacg 15421430  T
Q  227 aaggatcgaaagat-aagtttgatattggaa 256  Q
    |||||||||||||| ||||||||||||||||    
T  15421431 aaggatcgaaagatgaagtttgatattggaa 15421461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 16527508 - 16527378
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||     
T  16527508 aatctaatttcattgttttcaaactcaataacaagtattaaacgaaggaccgaaaggtgaagtttaataattgttatttcatcatctcaaatatcaaacg 16527409  T
Q  227 aaggatcgaaagat-aagtttgatattggaa 256  Q
    || ||||||||||| ||||||||| ||||||    
T  16527408 aatgatcgaaagatgaagtttgattttggaa 16527378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 2130180 - 2130310
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    ||||||||||| |  ||||||||||||  || || ||||||||||| |||||||| |||||||||||||||||||| |||||||||||| |||||||||     
T  2130180 aatctaatttcgtcgttttcaaactcagcaataagtattaaacgaaggaccgaaatgtgaagtttaatagttgttagttcatcatctcaaatatcaaacg 2130279  T
Q  227 aaggatcgaaagat-aagtttgatattggaa 256  Q
    |||||||||||||| ||||||||||||||||    
T  2130280 aaggatcgaaagatgaagtttgatattggaa 2130310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 12727058 - 12726928
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||||| | ||| |||| |||| || |||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||| | || |||||    
T  12727058 aatctaatcttattgtttttaaacccagtaacaagtattaaacgaaagaccgaaaggtatagtttaatagttgttatttcatcatctcaaacattaaaca 12726959  T
Q  227 aaggatcgaaagat-aagtttgatattggaa 256  Q
    ||||| ||||| || ||||||||||||||||    
T  12726958 aaggaccgaaaaatgaagtttgatattggaa 12726928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 28553549 - 28553650
Alignment:
Q  154 ataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatc--atctcatatatcaaacaaaggatcgaaagat-aagtttgata 250  Q
    ||||||||||| ||||||| || ||||||||||||||| ||| |||||||||||||  |||||| ||||||||| ||||| |||||| | ||||||||||    
T  28553549 ataacaaatatcaaacgaaggatcgaaaggtgaagtttgata-ttgttatttcatcatatctcaaatatcaaacgaaggaccgaaaggtgaagtttgata 28553647  T
Q  251 ttg 253  Q
    |||    
T  28553648 ttg 28553650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 20860525 - 20860418
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aag-tttga 248  Q
    |||||||||| |||||| ||||  | |||||| |||||||||||||||||||||   | ||| |||||||||| | |||||||||||||| ||| |||||    
T  20860525 tcaataacaagtattaatcgaagaatcgaaagatgaagtttaatagttgttattgattaatcacatatatcaagcgaaggatcgaaagatgaagttttga 20860426  T
Q  249 tattggaa 256  Q
    ||||||||    
T  20860425 tattggaa 20860418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 20898483 - 20898395
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaaga 239  Q
    |||||||||| |||||| |||  || | |||| |||||||||||||||||||||   ||||| || ||||||| |||||||||||||||    
T  20898483 tcaataacaagtattaatcgatggatcaaaagatgaagtttaatagttgttattaattcatcacaaatatcaagcaaaggatcgaaaga 20898395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 15346668 - 15346590
Alignment:
Q  162 tattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    ||||||| ||| ||||  || |||| |||||||||||||||||||||||||||| |||  || | ||||||||||||||    
T  15346668 tattaaaagaaggacccgaatgtgatgtttaatagttgttatttcatcatctcaaatactaaccgaaggatcgaaagat 15346590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 26194496 - 26194581
Alignment:
Q  155 taacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    |||||| |||||| |||  |||||||||| |||||||||| ||| ||| ||||| ||| || ||||||| | ||||||||||||||    
T  26194496 taacaagtattaatcgatggaccgaaaggcgaagtttaatggtttttaattcataatcacaaatatcaagcgaaggatcgaaagat 26194581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 20448665 - 20448772
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aag-tttga 248  Q
    |||||||| | |||||| |||||||  ||||| |||||||||||||||||||||   | ||| || |||||||   |||||||||||||| ||| |||||    
T  20448665 tcaataaccagtattaatcgaatgattgaaagatgaagtttaatagttgttattgattaatcacaaatatcaagtgaaggatcgaaagatgaagttttga 20448764  T
Q  249 tattggaa 256  Q
    ||||||||    
T  20448765 tattggaa 20448772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 20534431 - 20534538
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aag-tttga 248  Q
    |||||||| | |||||| |||||||  ||||| |||||||||||||||||||||   | ||| || |||||||   |||||||||||||| ||| |||||    
T  20534431 tcaataaccagtattaatcgaatgattgaaagatgaagtttaatagttgttattgattaatcacaaatatcaagtgaaggatcgaaagatgaagttttga 20534530  T
Q  249 tattggaa 256  Q
    ||||||||    
T  20534531 tattggaa 20534538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 23299146 - 23299199
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    |||||||||| |||||| |||  || |||||| |||||||||||||||||||||    
T  23299146 tcaataacaagtattaatcgatggatcgaaagatgaagtttaatagttgttatt 23299199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 52755181 - 52755128
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    |||||||||| |||||| |||| || |||||| | |||||||||||||||||||    
T  52755181 tcaataacaagtattaatcgaaggatcgaaagattaagtttaatagttgttatt 52755128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 14925748 - 14925878
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||     
T  14925748 aatctaatttcattgttttcaaactcagtaacaagtattaaacgaaggaccgaaaggtgaagtataatagttgttatttcatcatctcaaatatcaaacg 14925847  T
Q  227 aaggatcgaaagat-aagtttgatattggaa 256  Q
    |||||||||||||| |||||| |||||||||    
T  14925848 aaggatcgaaagatgaagtttaatattggaa 14925878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 15349214 - 15349344
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||     
T  15349214 aatctaatttcattgttttcaaactcagtaacaagtattaaacgaaggaccgaaaggtgaagtataatagttgttatttcatcatctcaaatatcaaacg 15349313  T
Q  227 aaggatcgaaagat-aagtttgatattggaa 256  Q
    |||||||||||||| |||||| |||||||||    
T  15349314 aaggatcgaaagatgaagtttaatattggaa 15349344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 1864535 - 1864665
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||| ||||||| |||||||||||| |||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||     
T  1864535 aatctattttcattgttttcaaactcagtaacaagtattaaacaaaggaccgaaatgtgaagtttaatagttgttatttcatcatctcaaatatcaaacg 1864634  T
Q  227 aaggatcgaaagat-aagtttgatattggaa 256  Q
    |||||||||||||| ||||||||||||||||    
T  1864635 aaggatcgaaagatgaagtttgatattggaa 1864665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 15523287 - 15523391
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| || ||||||| | |||||||||||||| |||||||||||    
T  15523287 aataacaagtattaatcgaaggaccgaaaggtgaagtttaatagttgttatttcatcatcacaaatatcaagcgaaggatcgaaagatgaagtttgatat 15523386  T
Q  252 tggaa 256  Q
    |||||    
T  15523387 tggaa 15523391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 679323 - 679219
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| | || ||| ||||||||||||||||||||||||||||||||||| || ||||||| | |||||||||||||| ||||||||||     
T  679323 aataacaagtattaatctaaggactgaaaggtgaagtttaatagttgttatttcatcatcacaaatatcaagcgaaggatcgaaagatgaagtttgatac 679224  T
Q  252 tggaa 256  Q
    |||||    
T  679223 tggaa 679219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 6847688 - 6847558
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||||| ||||| |||| ||||||| |||||| ||||||| |||  ||||||  | |||||||||||||||||| |||||||||||| ||||||||||    
T  6847688 aatctaatctcattgtttttaaactcagtaacaagtattaaatgaagtaccgaacagagaagtttaatagttgttacttcatcatctcaaatatcaaaca 6847589  T
Q  227 aaggatcgaa-agataagtttgatattggaa 256  Q
    ||| |  ||| ||| ||||||||||||||||    
T  6847588 aagtactgaacagagaagtttgatattggaa 6847558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 38877664 - 38877768
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||| || |||||||   ||||||| ||| || |||||||||||    
T  38877664 aataacaagtattaatcgaaggaccgaaatgtgaagtttaatagttgttatttcatcatcacaaatatcaagtgaaggatccaaaaatgaagtttgatat 38877763  T
Q  252 tggaa 256  Q
    |||||    
T  38877764 tggaa 38877768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 11281531 - 11281613
Alignment:
Q  131 taatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatct 213  Q
    |||| ||||| |||| || |||| ||||||  |||||| ||| |||||||| ||||||||||||| ||||||||| |||||||    
T  11281531 taatctcattgtttttaatctcagtaacaagaattaaatgaaggaccgaaatgtgaagtttaataattgttattttatcatct 11281613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 11483687 - 11483634
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    ||||||||||||||||| |||  || |||||| |||||||||||||||||||||    
T  11483687 tcaataacaaatattaatcgatggatcgaaagatgaagtttaatagttgttatt 11483634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 17911869 - 17911949
Alignment:
Q  178 gaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat--aagtttgatattggaa 256  Q
    ||||||||||||||||||||| ||| ||||| ||| || |||||||   ||||||||||||||  || |||||||||||||    
T  17911869 gaaaggtgaagtttaatagttattaattcataatcacaaatatcaagtgaaggatcgaaagatgaaattttgatattggaa 17911949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 30063793 - 30063686
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat--aagtttga 248  Q
    |||||||||| |||||| |||  || |||||| |||||||||||||||||||||   ||||| || ||||||| | ||||||| ||| ||  || |||||    
T  30063793 tcaataacaagtattaatcgatggatcgaaagatgaagtttaatagttgttattgattcatcacaaatatcaagcgaaggatcaaaatatgaaattttga 30063694  T
Q  249 tattggaa 256  Q
    ||||||||    
T  30063693 tattggaa 30063686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 4465589 - 4465527
Alignment:
Q  178 gaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    ||||||||||||||||| ||||||| ||||| |||  | ||||||| | ||||||||||||||    
T  4465589 gaaaggtgaagtttaatggttgttaattcataatcataaatatcaagcgaaggatcgaaagat 4465527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 46274356 - 46274406
Alignment:
Q  154 ataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    |||||||||||||| |||  || |||||| |||||||||||||||||||||    
T  46274356 ataacaaatattaatcgatggatcgaaagatgaagtttaatagttgttatt 46274406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 11242699 - 11242732
Alignment:
Q  158 caaatattaaacgaatgaccgaaaggtgaagttt 191  Q
    ||||||| ||||||||||||||||||||||||||    
T  11242699 caaatatcaaacgaatgaccgaaaggtgaagttt 11242732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 16897094 - 16897041
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    ||||||||||||||||| |||  || |||||| ||||||||||||||| |||||    
T  16897094 tcaataacaaatattaatcgatggatcgaaagatgaagtttaatagtttttatt 16897041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 11281615 - 11281647
Alignment:
Q  159 aaatattaaacgaatgaccgaaaggtgaagttt 191  Q
    ||||||||||||||||||||||| |||||||||    
T  11281615 aaatattaaacgaatgaccgaaaagtgaagttt 11281647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 24493177 - 24493307
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||     
T  24493177 aatctaatttcattgttttcaaattcaataacaagtattaaacgaaggaccgaaaggcgaagtttaatagttgttatttcatcatctcaaatatcaaacg 24493276  T
Q  227 aaggatcgaaagat-aagtttgatattggaa 256  Q
    |||||| ||||||| ||||||||||||||||    
T  24493277 aaggattgaaagatgaagtttgatattggaa 24493307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 21276855 - 21276985
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    ||||||| |||||  ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||     
T  21276855 aatctaaattcatcgttttcaaactcaataacaagtattaaacgaaggaccgaaatgtgaagtttaatagttgttatttcatcatctcaaatatcaaacg 21276954  T
Q  227 aaggatcgaaagat-aagtttgatattggaa 256  Q
    ||||||||||| || ||||||||||||||||    
T  21276955 aaggatcgaaaaatgaagtttgatattggaa 21276985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 17465072 - 17465203
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||||||||||  ||||||||||||||||||| |||| ||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||||      
T  17465072 aatctaatttcatcgttttcaaactcaataacaagtatttaacgaagtaccaaaaggtgaagtttaatagttgttatttcatcatctcaaatatcaaatg 17465171  T
Q  227 aaggatcgaaagat-aagtttgatattggaat 257  Q
    |||||| ||||||| |||||||||||||||||    
T  17465172 aaggattgaaagatgaagtttgatattggaat 17465203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 4743044 - 4743146
Alignment:
Q  155 taacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatattg 253  Q
    |||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| |||||||||||||    
T  4743044 taacaagtatcaaacgaaggaccgaaaagtgaagtttaatagttgttatttcatcatctcaaatatcaaacgaaggatcaaaagatgaagtttgatattg 4743143  T
Q  254 gaa 256  Q
    |||    
T  4743144 gaa 4743146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 17169046 - 17169151
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||| || ||||||| | |||||||||||||| |||||||||||    
T  17169046 aataacaagtattaatcgaaggaccgaaaggtgaagcttaatagttgttatttcatcatcacaaatatcaagcgaaggatcgaaagatgaagtttgatat 17169145  T
Q  252 tggaat 257  Q
    ||||||    
T  17169146 tggaat 17169151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 17174606 - 17174711
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||| || ||||||| | |||||||||||||| |||||||||||    
T  17174606 aataacaagtattaatcgaaggaccgaaaggtgaagcttaatagttgttatttcatcatcacaaatatcaagcgaaggatcgaaagatgaagtttgatat 17174705  T
Q  252 tggaat 257  Q
    ||||||    
T  17174706 tggaat 17174711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 21276456 - 21276571
Alignment:
Q  1 agatggtttggatgaagtttggacaagaaaagataaaagaa--tgcatgaagaaaagggtttttccagggagaaacacacgctccgtgcgttttaagcac 98  Q
    ||||||||||||||||||||||| |||||||||||||| ||  |||||||||||||||| |||||||||||||||  |||| || ||  |||||||||||    
T  21276456 agatggtttggatgaagtttggataagaaaagataaaaaaaaatgcatgaagaaaaggggttttccagggagaaaagcacggtctgtttgttttaagcac 21276555  T
Q  99 ccagaccgtgcgtttt 114  Q
    | ||| ||||||||||    
T  21276556 ctagatcgtgcgtttt 21276571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 9717591 - 9717504
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    |||||||| |||||| |||| || |||||||||||||||||||||||||||||||||||| || |||||||   ||| ||||||||||    
T  9717591 aataacaagtattaatcgaaggaacgaaaggtgaagtttaatagttgttatttcatcatcacaaatatcaagtgaagtatcgaaagat 9717504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 55267813 - 55267888
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgtta 202  Q
    |||||||||||||  |||||||||||| |||||| ||||||||||| |||||||| ||||||||| ||||||||||    
T  55267813 aatctaatttcatcgttttcaaactcagtaacaagtattaaacgaaggaccgaaatgtgaagtttgatagttgtta 55267888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 55268073 - 55268136
Alignment:
Q  194 tagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatattggaa 256  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  55268073 tagttgttatttcatcatctcaaatatcaaacgaaggatcgaaagatgaagtttgatattggaa 55268136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 10731394 - 10731447
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    ||||||||||||||||| |||| || |||||| |||||||||||||||||||||    
T  10731394 tcaataacaaatattaatcgaacgatcgaaagatgaagtttaatagttgttatt 10731447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 10945163 - 10945216
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    ||||||||||||||||| |||| || |||||| |||||||||||||||||||||    
T  10945163 tcaataacaaatattaatcgaacgatcgaaagatgaagtttaatagttgttatt 10945216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 11902457 - 11902368
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    |||||||||| |||||| |||| || |||||| |||||||||||||||||||||   ||||| || |||| || | ||||||||||||||    
T  11902457 tcaataacaagtattaatcgaaggatcgaaagatgaagtttaatagttgttattgattcatcacaaatattaagcgaaggatcgaaagat 11902368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 11377395 - 11377280
Alignment:
Q  142 ttttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat- 240  Q
    |||| ||| ||||||| || |||| |||||  ||||||||||||||||  ||||  | |||||||||||||| | ||||||||| | ||||||||||||     
T  11377395 tttttaaattcaataaaaagtattgaacgatggaccgaaaggtgaagtccaataactattatttcatcatctgaaatatcaaacgatggatcgaaagatg 11377296  T
Q  241 aagtttgatattggaa 256  Q
    || |||||| ||||||    
T  11377295 aattttgatgttggaa 11377280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 9857463 - 9857516
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    |||||||||| |||||| |||| || |||||| |||||||||||||||||||||    
T  9857463 tcaataacaagtattaatcgaaggatcgaaagatgaagtttaatagttgttatt 9857516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 16953742 - 16953689
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    |||||||||| |||||| |||| || |||||| |||||||||||||||||||||    
T  16953742 tcaataacaagtattaatcgaaagatcgaaagatgaagtttaatagttgttatt 16953689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 29367280 - 29367353
Alignment:
Q  142 ttttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctca 215  Q
    |||| ||||||||||| || |||| |||||  ||||||||||||||||  ||||  ||||||||||||||||||    
T  29367280 tttttaaactcaataaaaagtattgaacgatggaccgaaaggtgaagtccaataactgttatttcatcatctca 29367353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 253
Target Start/End: Complemental strand, 26493197 - 26493085
Alignment:
Q  142 ttttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat- 240  Q
    |||| |||| |||||| || |||| |||||  ||| ||||||||||||| |||     |||||||||||||||| ||||||| | | ||||||||||||     
T  26493197 tttttaaacgcaataaaaagtattgaacgatggactgaaaggtgaagttcaatgacaattatttcatcatctcaaatatcaaccgatggatcgaaagatg 26493098  T
Q  241 aagtttgatattg 253  Q
    |||||||||||||    
T  26493097 aagtttgatattg 26493085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 21511792 - 21511662
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||||||||||  ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  21511792 aatctaatttcatcgttttcaaactcaataacaagtgttaaacgaaggaccgaaaggtgaagtttaatagttgttatttcatcatctcaaatatcaaacg 21511693  T
Q  227 aaggatcgaaagat-aagtttgatattggaa 256  Q
    || ||||||||||| ||||||||||||||||    
T  21511692 aatgatcgaaagatgaagtttgatattggaa 21511662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 25592977 - 25592847
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||||||||||| |||||||||||| |||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||     
T  25592977 aatctaatttcattgttttcaaactcagtaacatgtgttaaacgaaggaccgaaaggtgaagtttaatagttgttatttcatcatctccaatatcaaacg 25592878  T
Q  227 aaggatcgaaagat-aagtttgatattggaa 256  Q
    |||||||||||||| ||||||||||| ||||    
T  25592877 aaggatcgaaagatgaagtttgatatgggaa 25592847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 127 - 257
Target Start/End: Complemental strand, 21516271 - 21516140
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||||||||||  |||| ||||||| |||||| | |||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  21516271 aatctaatttcatcgttttgaaactcagtaacaagtgttaaacgaagaaccgaaaggtgaagtttaatagttgttatttcatcatctcaaatatcaaacg 21516172  T
Q  227 aaggatcgaaagat-aagtttgatattggaat 257  Q
    ||||||||||| || |||||||||||||||||    
T  21516171 aaggatcgaaaaatgaagtttgatattggaat 21516140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 24371269 - 24371165
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| || ||||||| | |||||||||||||| |||||||||||    
T  24371269 aataacaagtattaatcgaaggaccgaaaggtgaagtttaatagttgttatttcatcatcacaaatatcaagcgaaggatcgaaagatgaagtttgatat 24371170  T
Q  252 tggaa 256  Q
    |||||    
T  24371169 tggaa 24371165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 23704534 - 23704623
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    ||||||||||||||||| |||| || |||||| |||||||||||||||||||||   ||||| || |||| || | ||||||||||||||    
T  23704534 tcaataacaaatattaatcgaaggatcgaaagatgaagtttaatagttgttattgattcatcacaaatattaagcgaaggatcgaaagat 23704623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 24322057 - 24322161
Alignment:
Q  155 taacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aag-tttgatatt 252  Q
    |||||| |||||| |||  ||| ||||||||||||||||||||||||| ||||| ||| || ||||||| | || ||||||||||| ||| |||||||||    
T  24322057 taacaagtattaatcgatggactgaaaggtgaagtttaatagttgttaattcataatcacaaatatcaagcgaatgatcgaaagatgaagttttgatatt 24322156  T
Q  253 ggaat 257  Q
    |||||    
T  24322157 ggaat 24322161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 24177526 - 24177437
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    |||||||||| |||||| | || || |||||| |||||||||||||||||||||   ||||| || |||| || | ||||||||||||||    
T  24177526 tcaataacaagtattaatcaaaggatcgaaagatgaagtttaatagttgttattgattcatcacaaatattaagcgaaggatcgaaagat 24177437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 20852387 - 20852490
Alignment:
Q  155 taacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aag-tttgatatt 252  Q
    |||||| |||||| |||  ||| |||||  |||||||||||||||||| ||||| ||| || |||||||   |||||||||||||| ||| |||||||||    
T  20852387 taacaagtattaatcgatggactgaaagacgaagtttaatagttgttaattcataatcacaaatatcaagtgaaggatcgaaagatgaagttttgatatt 20852486  T
Q  253 ggaa 256  Q
    ||||    
T  20852487 ggaa 20852490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 23256850 - 23256797
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    ||||||||||||||||| |||  || |||||| |||||||||||| ||||||||    
T  23256850 tcaataacaaatattaatcgatggatcgaaagatgaagtttaatatttgttatt 23256797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 29577179 - 29577126
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    |||||||||| |||||| |||| ||  ||||| |||||||||||||||||||||    
T  29577179 tcaataacaagtattaatcgaaggattgaaagatgaagtttaatagttgttatt 29577126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 19222145 - 19222275
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    ||||||||| |||| |||||||||||  |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||     
T  19222145 aatctaattccattgttttcaaactcggtaacaagtattaaacgaaggaccgaaagatgaagtttaatagttgttatttcatcatctcaaatatcaaacg 19222244  T
Q  227 aaggatcgaaagat-aagtttgatattggaa 256  Q
    |||||||| ||||| ||||||||||||||||    
T  19222245 aaggatcggaagatgaagtttgatattggaa 19222275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 24166521 - 24166626
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aag-tttgata 250  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||||||||||||| ||| |||||||    
T  24166521 aataacaagtattaatcgaatgaccgaaaggtgaagtttaatagttgttatttcatcatcacaaatatcaagcgaaggatcgaaagatgaagatttgata 24166620  T
Q  251 ttggaa 256  Q
    ||||||    
T  24166621 ttggaa 24166626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 23029397 - 23029293
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| ||||||||| |||||| |||||||||||||||||||||| || ||||||| | |||||||||||||| |||||||||||    
T  23029397 aataacaagtattaatcgaaggaccgaaagatgaagtctaatagttgttatttcatcatcacaaatatcaagcgaaggatcgaaagatgaagtttgatat 23029298  T
Q  252 tggaa 256  Q
    |||||    
T  23029297 tggaa 23029293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 23114517 - 23114621
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | || ||| ||| ||| |||||| ||||    
T  23114517 aataacaagtattaatcgaaggatcgaaaggtgaagtttaatagttgttatttcatcatctcaaatatcaagcgaatgatagaatgatgaagtttaatat 23114616  T
Q  252 tggaa 256  Q
    |||||    
T  23114617 tggaa 23114621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 20724680 - 20724591
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    |||||||||| |||||| ||||||| |||||| |||||||||||||||||||||   ||||| || |||| || | ||||||||||||||    
T  20724680 tcaataacaagtattaatcgaatgatcgaaagatgaagtttaatagttgttattgattcatcacaaatattaagcgaaggatcgaaagat 20724591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 42687511 - 42687433
Alignment:
Q  147 aaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaac 225  Q
    ||||||| |||||  |||||||||||  ||| || || |||||||||||||||||| |||||||||||| |||||||||    
T  42687511 aaactcagtaacacgtattaaacgaaataccaaacggagaagtttaatagttgttacttcatcatctcaaatatcaaac 42687433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 17408564 - 17408475
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    |||||||||| |||||| |||| || |||||| |||||||||||||||||||||   ||||| || |||| || | ||||||||||||||    
T  17408564 tcaataacaagtattaatcgaaggatcgaaagatgaagtttaatagttgttattgattcatcacaaatattaagcgaaggatcgaaagat 17408475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 22942619 - 22942669
Alignment:
Q  154 ataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    ||||||| |||||| |||| || |||||| |||||||||||||||||||||    
T  22942619 ataacaagtattaatcgaaggatcgaaagatgaagtttaatagttgttatt 22942669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 22948826 - 22948879
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    |||||||||| |||||| ||||  | |||||| |||||||||||||||||||||    
T  22948826 tcaataacaagtattaatcgaagcatcgaaagatgaagtttaatagttgttatt 22948879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 3728 - 3832
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||||   |||||||||||||| |||||||||||    
T  3728 aataacaagtattaatcgaaggaccgaaaggtgaagtttaatagttgttatttcatcatcacaaatatcaagagaaggatcgaaagatgaagtttgatat 3827  T
Q  252 tggaa 256  Q
    |||||    
T  3828 tggaa 3832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 3893 - 3997
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||||   |||||||||||||| |||||||||||    
T  3893 aataacaagtattaatcgaaggaccgaaaggtgaagtttaatagttgttatttcatcatcacaaatatcaagagaaggatcgaaagatgaagtttgatat 3992  T
Q  252 tggaa 256  Q
    |||||    
T  3993 tggaa 3997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 168452 - 168556
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| |||||||| ||||||||||||||||||| |||||||||| || ||||||| ||||||||| |||||| |||||||||||    
T  168452 aataacaagtattaatcgaaggaccgaaatgtgaagtttaatagttgttgtttcatcatcacaaatatcaagcaaaggatcaaaagatgaagtttgatat 168551  T
Q  252 tggaa 256  Q
    |||||    
T  168552 tggaa 168556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 9798334 - 9798204
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaaca 226  Q
    |||||||| ||||| |||| ||||||| |||||| ||||||||||| || ||||| |||||||||||||||||||||||||| |||||| |||||| |      
T  9798334 aatctaatctcattgtttttaaactcagtaacaagtattaaacgaaggatcgaaatgtgaagtttaatagttgttatttcataatctcaaatatcagaag 9798235  T
Q  227 aaggatcgaaa-gataagtttgatattggaa 256  Q
    ||||| ||||| |  ||||||||||||||||    
T  9798234 aaggaacgaaatgtgaagtttgatattggaa 9798204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 22904856 - 22904943
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| || ||||||| | || |||||||||||    
T  22904856 aataacaagtattaatcgaaggaccgaaaggtgaagtttaatagttgttatttcatcatcacaaatatcaagcgaacgatcgaaagat 22904943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 24221365 - 24221276
Alignment:
Q  169 cgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagataa--gtttgatattggaa 256  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||| || ||||||| | ||  ||||||||||||   |||||||||||||    
T  24221365 cgaaggaccgaaagatgaagtttaatagttgttatttcgtcatcacaaatatcaagcgaaatatcgaaagataaagttttgatattggaa 24221276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 17315293 - 17315216
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttattt 205  Q
    |||||||| |||| ||||| || || |||||||||||| ||||||| ||| |||||||||||||| ||| |||||||||    
T  17315293 aatctaatctcatcatttttaagcttaataacaaatatcaaacgaaggactgaaaggtgaagtttgata-ttgttattt 17315216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 23455838 - 23455891
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    |||||||||| |||||| |||| || |||||| |||||||||||||||||||||    
T  23455838 tcaataacaattattaatcgaaggatcgaaagatgaagtttaatagttgttatt 23455891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 17337204 - 17337127
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttattt 205  Q
    |||||| | |||| ||||| || || |||||||||||| ||||||| |||||||| ||||||||| ||| |||||||||    
T  17337204 aatctactctcatcatttttaagcttaataacaaatatcaaacgaaggaccgaaatgtgaagtttgata-ttgttattt 17337127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 31965341 - 31965241
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| |||| |||||||||||||||||||||||||||||||||| || ||||||| | || |||| |||||| |||||||||||    
T  31965341 aataacaagtattaatcgaaggaccaaaaggtgaagtttaatagttgttatttcatcatcacaaatatcaagcgaatgatcaaaagatgaagtttgatat 31965242  T
Q  252 t 252  Q
    |    
T  31965241 t 31965241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 20221446 - 20221531
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaag 238  Q
    ||||||||  ||||| |||| || |||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||    
T  20221446 aataacaagcattaatcgaaggatcgaaaggtgaagtttaatagttgttatttcatcatcacaaatatcaagcgaaggatcgaaag 20221531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 22115430 - 22115515
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaag 238  Q
    ||||||||  ||||| |||| || |||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||    
T  22115430 aataacaagcattaatcgaaggatcgaaaggtgaagtttaatagttgttatttcatcatcacaaatatcaagcgaaggatcgaaag 22115515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 29682866 - 29682970
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| |||||||| ||||||||||||||||||||||||| |||   | ||||||| | ||| |||||||||| |||||||||||    
T  29682866 aataacaagtattaatcgaaggaccgaaatgtgaagtttaatagttgttatttcaacattataaatatcaagcgaagtatcgaaagatgaagtttgatat 29682965  T
Q  252 tggaa 256  Q
    |||||    
T  29682966 tggaa 29682970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 17756769 - 17756884
Alignment:
Q  142 ttttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat- 240  Q
    |||| ||||||||||| ||||||| |||||   ||||||||||||| || ||||  |  ||||||||||||||| ||||||||| ||||||| ||||||     
T  17756769 tttttaaactcaataaaaaatattgaacgatgaaccgaaaggtgaatttcaataactaatatttcatcatctcaaatatcaaacgaaggatcaaaagatg 17756868  T
Q  241 aagtttgatattggaa 256  Q
    ||||| ||||||||||    
T  17756869 aagttagatattggaa 17756884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 20225343 - 20225446
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagataagtttgatatt 252  Q
    |||| ||| |||||| ||||  |||||||||||| ||||||||||||||||||||||||| || || ||||   |||||||||||||| |  ||||||||    
T  20225343 aatagcaagtattaatcgaagcaccgaaaggtgaggtttaatagttgttatttcatcatcacaaatgtcaagggaaggatcgaaagatgaagttgatatt 20225442  T
Q  253 ggaa 256  Q
    ||||    
T  20225443 ggaa 20225446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 22119327 - 22119430
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagataagtttgatatt 252  Q
    |||| ||| |||||| ||||  |||||||||||| ||||||||||||||||||||||||| || || ||||   |||||||||||||| |  ||||||||    
T  22119327 aatagcaagtattaatcgaagcaccgaaaggtgaggtttaatagttgttatttcatcatcacaaatgtcaagggaaggatcgaaagatgaagttgatatt 22119426  T
Q  253 ggaa 256  Q
    ||||    
T  22119427 ggaa 22119430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 18973919 - 18974003
Alignment:
Q  156 aacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    ||||| |||||||||| |||||||||||  ||||||||||||| ||| ||||| ||| || ||||||| | ||| ||||||||||    
T  18973919 aacaagtattaaacgattgaccgaaaggcaaagtttaatagtttttaattcataatcacaaatatcaagcgaagaatcgaaagat 18974003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 20464632 - 20464738
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aag-tttga 248  Q
    |||||||||| |||||| |||| || |||||| ||||||||||||| |||||||   | ||| || ||||||| |||||||||||||||| ||| |||||    
T  20464632 tcaataacaagtattaatcgaaggatcgaaagatgaagtttaatag-tgttattgattaatcacaaatatcaagcaaaggatcgaaagatgaagttttga 20464730  T
Q  249 tattggaa 256  Q
    ||||||||    
T  20464731 tattggaa 20464738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 15172481 - 15172567
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaa 237  Q
    ||||||||||||||||| |||  || |||||| |||||||||||||||||||||   ||||| || |||||||   |||||||||||    
T  15172481 tcaataacaaatattaatcgatggatcgaaagatgaagtttaatagttgttattgattcatcacaaatatcaagtgaaggatcgaaa 15172567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 15470993 - 15470907
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaa 237  Q
    ||||||||||||||||| |||  || |||||| |||||||||||||||||||||   ||||| || |||||||   |||||||||||    
T  15470993 tcaataacaaatattaatcgatggatcgaaagatgaagtttaatagttgttattgattcatcacaaatatcaagtgaaggatcgaaa 15470907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 14992106 - 14992053
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    ||||||||||||||||| |||| || | |||| |||||||||||||||||||||    
T  14992106 tcaataacaaatattaatcgaaggatcaaaagatgaagtttaatagttgttatt 14992053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 22601184 - 22601131
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    |||||||||| |||||| |||| || |||||| |||||||||||||||||||||    
T  22601184 tcaataacaagtattaatcgaaggatcgaaagatgaagtttaatagttgttatt 22601131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 24392699 - 24392634
Alignment:
Q  175 accgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    ||||||||| |||||||||||||||||| ||||  ||| || |||| || |||| |||||||||||    
T  24392699 accgaaaggcgaagtttaatagttgttaattcacaatcacaaatataaagcaaaagatcgaaagat 24392634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 15162472 - 15162576
Alignment:
Q  154 ataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aag-tttgatat 251  Q
    |||||||||||||| |||   | |||||| |||||||||||||||||||||   ||||| || |||| ||   |||||||||||||| ||| ||||||||    
T  15162472 ataacaaatattaatcgatgaatcgaaagatgaagtttaatagttgttattgattcatcacaaatataaagtgaaggatcgaaagatgaagttttgatat 15162571  T
Q  252 tggaa 256  Q
    |||||    
T  15162572 tggaa 15162576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 9774908 - 9774805
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| |||| |||||||| |||||||||||||||| |||||||||| || || ||||||| | || ||||||||||| || ||||||||    
T  9774908 aataacaagtattaatcgaaggaccgaaatgtgaagtttaatagtt-ttatttcatcctcacaaatatcaagcgaatgatcgaaagataaaatttgatat 9774810  T
Q  252 tggaa 256  Q
    |||||    
T  9774809 tggaa 9774805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 16999019 - 16998922
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaac 225  Q
    |||||||| |||| ||||| |||||||||||||| |||||||||||  ||||||  | ||||||||||||| |||| ||| |||||||| |||||||||    
T  16999019 aatctaatctcatcatttt-aaactcaataacaagtattaaacgaagtaccgaacagagaagtttaatagtcgttacttcgtcatctcaaatatcaaac 16998922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 9762453 - 9762350
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatat 251  Q
    |||||||| |||||| ||||  ||||||| |||||||||||||||| |||||||||| || || ||||||| | || ||||||||||| || ||||||||    
T  9762453 aataacaagtattaatcgaagaaccgaaatgtgaagtttaatagtt-ttatttcatcctcacaaatatcaagcgaatgatcgaaagatgaaatttgatat 9762355  T
Q  252 tggaa 256  Q
    |||||    
T  9762354 tggaa 9762350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 255
Target Start/End: Original strand, 11271550 - 11271679
Alignment:
Q  127 aatctaatttcattattttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt--tcatcatctcatatatcaaa 224  Q
    |||||||| |||| ||||| || || |||||||||||| ||||||| || |||||| |||||||| ||| || |||||  |||| |||||| ||||||||    
T  11271550 aatctaatctcatcatttttaagcttaataacaaatatcaaacgaaggatcgaaagatgaagtttgata-ttattatttatcat-atctcaaatatcaaa 11271647  T
Q  225 caaaggatcgaaagat-aagtttgatattgga 255  Q
      |||||||||||||| |||||||||||||||    
T  11271648 tgaaggatcgaaagatgaagtttgatattgga 11271679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 27992273 - 27992213
Alignment:
Q  197 ttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aagtttgatattggaa 256  Q
    ||||||||||||||||||| ||||||| | || ||||||||||| ||||||||||||||||    
T  27992273 ttgttatttcatcatctcaaatatcaagcgaaagatcgaaagatgaagtttgatattggaa 27992213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 11577581 - 11577474
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aag-tttga 248  Q
    |||||||||| ||||||  ||| || |||||| ||||| |||||||||||||||   ||||| || ||||||| ||||||||||||| || ||| |||||    
T  11577581 tcaataacaagtattaattgaaggatcgaaagatgaaggttaatagttgttattgattcatcacaaatatcaagcaaaggatcgaaatatgaagttttga 11577482  T
Q  249 tattggaa 256  Q
    ||||||||    
T  11577481 tattggaa 11577474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 11827243 - 11827190
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatt 204  Q
    ||||||||||||||||| |||  || |||||| |||||||||||||||||||||    
T  11827243 tcaataacaaatattaatcgatggatcgaaagatgaagtttaatagttgttatt 11827190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 27992538 - 27992496
Alignment:
Q  153 aataacaaatattaaacgaatgaccgaaaggtgaagtttaata 195  Q
    |||||||| |||||| |||| ||||||||||||||||||||||    
T  27992538 aataacaagtattaatcgaaggaccgaaaggtgaagtttaata 27992496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 40846745 - 40846823
Alignment:
Q  162 tattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    |||||| |||| || |||||| |||||||||||||||||||||   ||||| || |||| || | ||||||||||||||    
T  40846745 tattaatcgaaggatcgaaagatgaagtttaatagttgttattgattcatcacaaatattaagcgaaggatcgaaagat 40846823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 8532149 - 8532201
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttat 203  Q
    ||||||||||||||||| |||  || |||||| |||||||||||| |||||||    
T  8532149 tcaataacaaatattaatcgatggatcgaaagatgaagtttaataattgttat 8532201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 33138 - 33241
Alignment:
Q  155 taacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aag-tttgatatt 252  Q
    |||||| |||||| |||  ||| |||| |||||||||||||||||||| ||||| ||| || ||||||| | |||||||||||||| ||| |||||||||    
T  33138 taacaagtattaatcgatggactgaaaagtgaagtttaatagttgttaattcataatcacaaatatcaagcgaaggatcgaaagatgaagttttgatatt 33237  T
Q  253 ggaa 256  Q
    ||||    
T  33238 ggaa 33241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 38445 - 38548
Alignment:
Q  155 taacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aag-tttgatatt 252  Q
    |||||| |||||| |||  ||| |||| |||||||||||||||||||| ||||| ||| || ||||||| | |||||||||||||| ||| |||||||||    
T  38445 taacaagtattaatcgatggactgaaaagtgaagtttaatagttgttaattcataatcacaaatatcaagcgaaggatcgaaagatgaagttttgatatt 38544  T
Q  253 ggaa 256  Q
    ||||    
T  38545 ggaa 38548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 38794 - 38883
Alignment:
Q  151 tcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    |||||||||| | ||||||||| || |||||| |||||||||||||||||||||   |||||||| |||  || | ||||||||||||||    
T  38794 tcaataacaagtgttaaacgaaggatcgaaagatgaagtttaatagttgttattgattcatctcaaatactaaccgaaggatcgaaagat 38883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 36622 - 36720
Alignment:
Q  142 ttttcaaactcaataacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat 240  Q
    |||| ||||||||||| || |||| || |||  ||||||| | ||| || ||||  | |||||||||||||||| ||||||||| ||||||||||||||    
T  36622 tttttaaactcaataaaaagtattgaatgaagaaccgaaaagagaaattcaataactattatttcatcatctcaaatatcaaacgaaggatcgaaagat 36720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 22563 - 22461
Alignment:
Q  156 aacaaatattaaacgaatgaccgaaaggtgaagtttaatagttgttatttcatcatctcatatatcaaacaaaggatcgaaagat-aag-tttgatattg 253  Q
    ||||| |||||||| | ||||||||||  |||||||||||||||||| ||| | ||| || ||||||| | ||| |||||||||| ||| ||||||||||    
T  22563 aacaagtattaaacaattgaccgaaagacgaagtttaatagttgttaattcttaatcacaaatatcaagcgaagaatcgaaagatgaagttttgatattg 22464  T
Q  254 gaa 256  Q
    |||    
T  22463 gaa 22461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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