View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_39 (Length: 277)
Name: NF1243_high_39
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 29464304 - 29464067
Alignment:
| Q |
17 |
tacagatataatgggtactttgagatgactt------gttgcttgaagttattccaatgatctaatctatcttctaaaagatcgtctaaaagtgcttgca |
110 |
Q |
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| T |
29464304 |
tacagatataatgggtactttgagatgacttatacttgttgcttgaagttattccaatgatctaatctatcttctaaaagatcgtctaaaagtgcttgca |
29464205 |
T |
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| Q |
111 |
agtgtatttataaagattatggccaaaatgtgcgagtttattttatctagtttgatttatctttgacttaatctagtttgatagatgtgcacaagttgac |
210 |
Q |
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| T |
29464204 |
agtgtatttataaagattatggccaaaatgtgagagtttattttatctagtttgatttatctttgacttaatctagtttgatagatgtgcacaagttgac |
29464105 |
T |
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| Q |
211 |
tacttggacagacgagagtttatgtcattgatcaatag |
248 |
Q |
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| T |
29464104 |
tacttggacagacgagagtttatgtcattgatcaatag |
29464067 |
T |
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Back To:
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 8674812 - 8674885
Alignment:
| Q |
166 |
tttatctttgacttaatctagtttgatagatgtgcacaagttgactacttggacagacgagagtttatgtcatt |
239 |
Q |
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| T |
8674812 |
tttatttttaactcaatctagtttgatagatgtgcacaagttcactacttggatggaggacaatttatgtcatt |
8674885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 8674747 - 8674819
Alignment:
| Q |
82 |
ttctaaaagatcgtctaaaagtgcttgcaagtgtatttataaagattatggccaaaatgtgcgagtttatttt |
154 |
Q |
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| T |
8674747 |
ttctgaaagatcatcaaaaaaagcttgcaaatttatttataaacattatagccaaaatgtgctagtttatttt |
8674819 |
T |
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