View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_42 (Length: 274)
Name: NF1243_high_42
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 48493371 - 48493127
Alignment:
| Q |
1 |
ccacaaattttgacgtgatttaccacaactttcgcgtgttcaaatctacatgcaattggacacttgaaaattatgattaacgacatttgaattcgtgatt |
100 |
Q |
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| T |
48493371 |
ccacaaattttgacgtgatttaccacaactttcgcgtgttcaaatctacatgcaattggacacttgaaaattatgattaacgacattcgaattcgtgatt |
48493272 |
T |
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| Q |
101 |
aatgaagttatattggtggttgagtttcaattgttggtatatccattaactctaccgcattaaacacttagaatgtttttgcaagaattgtttaaatttg |
200 |
Q |
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| T |
48493271 |
aatgaagttatattggtggttgagtttcaattgttggtatatccattaactctaccgcattaaacacttagaatgtttttgcaagaattgtttaaatttg |
48493172 |
T |
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| Q |
201 |
gttgtttgaaactcatttatgcacaacttaaactgacttgaaaac |
245 |
Q |
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| T |
48493171 |
gttgtttgaaactcatttatgcacaacttaaactgacttgaaaac |
48493127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 29136883 - 29136964
Alignment:
| Q |
36 |
gtgttcaaatctacatgcaattggacacttgaaaattatgattaacgacatttgaattcgtgattaatgaagttatattggt |
117 |
Q |
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| T |
29136883 |
gtgttcaaatctacatgtagttgaacatctgaaaattatggttaaccacatccaaattcgtgtttaatgaagttacattggt |
29136964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 33577232 - 33577151
Alignment:
| Q |
36 |
gtgttcaaatctacatgcaattggacacttgaaaattatgattaacgacatttgaattcgtgattaatgaagttatattggt |
117 |
Q |
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| T |
33577232 |
gtgttcaaatctacatggagttgaacatctgaaaataatggttaaccacattcaaatttgtggttaatgaagttacattggt |
33577151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 40309844 - 40309784
Alignment:
| Q |
15 |
gtgatttaccacaactttcgcgtgttcaaatctacatgcaattggacacttgaaaattatg |
75 |
Q |
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| T |
40309844 |
gtgattaaccacaactttcaagtgttcaaacctacatgcagttaaatacttgaaaattatg |
40309784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 40329385 - 40329325
Alignment:
| Q |
15 |
gtgatttaccacaactttcgcgtgttcaaatctacatgcaattggacacttgaaaattatg |
75 |
Q |
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|||||| |||||||||||| ||||||||| ||||||||| || | |||||||||||||| |
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| T |
40329385 |
gtgattaaccacaactttcaagtgttcaaacctacatgcagttaaatacttgaaaattatg |
40329325 |
T |
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