View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_44 (Length: 268)
Name: NF1243_high_44
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 35744949 - 35745178
Alignment:
| Q |
11 |
cacagaagtaggccacagcctagtataaaataaatgtccacatttagattttcaggatgctaagatttcagtaattatcataattagaataatttcattt |
110 |
Q |
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| T |
35744949 |
cacagaagtaggccacagcctagtataaaataaatgtccacatttagattttcaggatgctaagatttcagtaattatcataattagaataatttcattt |
35745048 |
T |
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| Q |
111 |
caggtgcagcttatttaatgttgaaactataattacctgatcaatagacttgtcctcaatctttgacagttgagtttttgttatgatctctggatatagc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35745049 |
caggtgcagcttatttaatgttgaaactataattacctgatcaatagacttgtcctcaatctttgacacttgagtttttgttatgatctctggatatagc |
35745148 |
T |
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| Q |
211 |
ctttgtagatcattcagtgttctcataact |
240 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35745149 |
ctttgtagatcattcagtgttctcataact |
35745178 |
T |
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