View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_46 (Length: 266)
Name: NF1243_high_46
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 33519598 - 33519366
Alignment:
| Q |
29 |
agcattccttggcatagagagccccgtagttattgatgccaatgaagtccaggctgcctcttaggaggctcttctccttagatgagaacctaggcaactg |
128 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33519598 |
agcaatccttggcatagagagccccgtagttattgatgccaatgaagtccaggctgcctcttaggaggctcttctccttagatgagaacctaggcaactg |
33519499 |
T |
|
| Q |
129 |
gctcccaagaatagagcgcatatcagcagggtactcgccaaaaactaggggatctagtaaccttgccatcagaagagcggaaaaagttactaagaaagaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33519498 |
gctcccaagaatagagcgcatatcagcagggtactcgccaaaaactaggggatctagtaaccttgccatcagaagagcggaaaaagttactaagaaagaa |
33519399 |
T |
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| Q |
229 |
cgatatagccattttcttttaattcatctcact |
261 |
Q |
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||||| ||||||||||||||||||||| ||||| |
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| T |
33519398 |
cgatagagccattttcttttaattcatgtcact |
33519366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 33496358 - 33496521
Alignment:
| Q |
29 |
agcattccttggcatagagagccccgtagttattgatgccaatgaagtccaggctgcctcttaggaggctcttctccttagatgagaacctaggcaactg |
128 |
Q |
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|||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| | | |||||| | |
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| T |
33496358 |
agcaatccttggcatagagagctccatagttattgatgccaatgaagtccaggctgcctcttaggagactcttctccttcgtagagatctttggcaaccg |
33496457 |
T |
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| Q |
129 |
gctcccaagaatagagcgcatatcagcagggtactcgccaaaaactaggggatctagtaacctt |
192 |
Q |
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| T |
33496458 |
gttcccaagaatagagcgcatctcagcagggtactcaccaaaaactaggggatctagtaacctt |
33496521 |
T |
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