View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_49 (Length: 265)
Name: NF1243_high_49
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 8235880 - 8235632
Alignment:
| Q |
1 |
tccaaacttcatccaaaccatcttgcttctttcatattcaacctgaaacgaaaaccaaagtttttgtagtaaaataactcaagaaatacgactaaaacta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
8235880 |
tccaaacttcatccaaaccatcttgcttctttcatattcaacctgaaacgaaaaccacagtttttgtagtaaaataactcaagaaatacgactaaaacca |
8235781 |
T |
|
| Q |
101 |
agaagactttattgaattaaaatgctaaaagcagttaaaactacggcttatcacctgatctccctcttcgggccgggacttctccacccacattgacttg |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8235780 |
agaagactttattgaattaaaatgccaaaagcagttaaaactacggcttatcacctgatctccctctt-----cgggacttctccacccacattgacttg |
8235686 |
T |
|
| Q |
201 |
tttccacactctggctggcattgctcacctcacctccatctagttgtcgttcat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8235685 |
tttccacactctggctggcattgctcacctcacctccatctagttgtcgttcat |
8235632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 3363526 - 3363675
Alignment:
| Q |
3 |
caaacttcatccaaaccatcttgcttctttcatattcaacctgaaacgaaaaccaaagtttttgtagtaaaataactcaagaaatacgactaaaacta-a |
101 |
Q |
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||||||| | ||||||| || ||||||||| || |||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |||||| |
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| T |
3363526 |
caaacttgaaccaaaccttcatgcttctttgattaccaacctgaaacgaaaacccaagcttttgtagtaaaatagctcaagaaatacgact-aaactagc |
3363624 |
T |
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| Q |
102 |
gaagactttattgaattaaaatgctaaaagcagttaaaactacggcttatca |
153 |
Q |
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| T |
3363625 |
aaaaacattattgaattaaaatgccaaaaaca-ataaaactacgacttatca |
3363675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 27318032 - 27317954
Alignment:
| Q |
51 |
aaaaccaaagtttttgtagtaaaataactcaagaaatacgactaaaactaagaagactttattgaattaaaatgctaaaa |
130 |
Q |
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| T |
27318032 |
aaaaccaaattatttgtagtaaaatagctcta-aactaggattaaaactaacaatactttattgaatttaaatgctaaaa |
27317954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 21276478 - 21276326
Alignment:
| Q |
1 |
tccaaacttcatccaaaccatcttgcttctttcatattcaacctgaaacgaaaaccaaagtttttgtagtaaaataactcaagaaatacgactaaaacta |
100 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| | ||||||||||||| || ||||||||||||||||| ||||| |
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| T |
21276478 |
tccaaacttcatccaaaccatctcgcttctttgatattcaacctgaaacaaaaaccacaatttttgtagtaaattagctcaagaaatacgactataacta |
21276379 |
T |
|
| Q |
101 |
agaagactttattgaattaaaatgctaaaagcagttaaaactacggcttatca |
153 |
Q |
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| T |
21276378 |
acaagactttattgaattaaaatgccaaaagcagttaaaactacgacttatca |
21276326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 20684591 - 20684442
Alignment:
| Q |
2 |
ccaaacttcatccaaaccatcttgcttctttcatattcaacctgaaacgaaaaccaaagtttttgtagtaaaataactcaagaaatacgactaaaactaa |
101 |
Q |
| |
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|||||||||| |||||||||| ||||||| ||| | |||||||||||||||||| || ||||||||||||||| |||||||||| ||| ||||||||| |
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| T |
20684591 |
ccaaacttcaaccaaaccatcacacttctttgataattaacctgaaacgaaaaccatagcttttgtagtaaaatagctcaagaaattcgattaaaactaa |
20684492 |
T |
|
| Q |
102 |
gaagactttattgaattaaaatgctaaaagcagttaaaactacggcttat |
151 |
Q |
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|||| ||||| ||||||||||| ||||||| | ||||||||| ||||| |
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| T |
20684491 |
cgagaccttattaaattaaaatgccaaaagcaataaaaactacgacttat |
20684442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 20054655 - 20054539
Alignment:
| Q |
37 |
ttcaacctgaaacgaaaaccaaag-tttttgtagtaaaataactcaagaaatacgactaaaactaagaagactttattgaattaaaatgctaaaagcagt |
135 |
Q |
| |
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|||||||||| | ||||| || || |||||||||||||||| |||||||||||| |||||| || ||| | |||||||||||||||||||||| || |
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| T |
20054655 |
ttcaacctgagatgaaaatcatagatttttgtagtaaaatagctcaagaaatacaactaaagttacgaa-atcttattgaattaaaatgctaaaa-cacc |
20054558 |
T |
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| Q |
136 |
taaaactacggcttatcac |
154 |
Q |
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|||||||||| |||||||| |
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| T |
20054557 |
taaaactacgacttatcac |
20054539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 13833638 - 13833788
Alignment:
| Q |
2 |
ccaaacttcatccaaaccatcttgcttctttcatattcaacctgaaacgaaaaccaaagtttttgtagtaaaataactcaagaaatacgactaaaactaa |
101 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| ||||||||||||||| |||| | | ||| | ||||| |||||| ||||||||||||||| ||||| || |
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| T |
13833638 |
ccaaacttcaaccaaaccatcttgtttctttgatattcaacctgaaatgaaa-ctatagtgtctgtagcaaaatagctcaagaaatacgaccaaaaccaa |
13833736 |
T |
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| Q |
102 |
gaagactttattgaattaaaatgctaaaagcagttaaaactacggcttatca |
153 |
Q |
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|| | |||||||||||||||||| |||| || | ||||||||||||||||| |
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| T |
13833737 |
caaaattttattgaattaaaatgccaaaaacaataaaaactacggcttatca |
13833788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 22653998 - 22654076
Alignment:
| Q |
51 |
aaaaccaaagtttttgtagtaaaataactcaagaaatacgactaaaactaagaagactttattgaattaaaatgctaaaa |
130 |
Q |
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||||||||||| |||||||||||||| ||| | || || || ||||||||| || ||||||||||||| |||||||||| |
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| T |
22653998 |
aaaaccaaagtatttgtagtaaaatagctcta-aactaggattaaaactaacaatactttattgaatttgaatgctaaaa |
22654076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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