View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_51 (Length: 261)
Name: NF1243_high_51
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_51 |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 28053524 - 28053599
Alignment:
| Q |
19 |
caaaggttgataagaaagaaagcctcttcgccaacgctgtttgtagttcatagctttctttacactccttagcgta |
94 |
Q |
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| T |
28053524 |
caaaggttgataagaaagaaagcctcttcgccaacgctgtttgtagttcatagctttctttacactccttagcgta |
28053599 |
T |
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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 28053675 - 28053734
Alignment:
| Q |
170 |
attagtagaaactcgaaacgacgacgtatcttcttttgtaatatcatcacttgagaatgt |
229 |
Q |
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| T |
28053675 |
attagtagaaactcgaaacgacgacgtatcttcttttgtaatatcatcacttgagaatgt |
28053734 |
T |
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