View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_55 (Length: 256)
Name: NF1243_high_55
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_55 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 1956949 - 1957173
Alignment:
| Q |
2 |
ataacacaacctctcataatcttgaatgacttctaatttcatgaaactgccctgttttgatcagcttcaaacaatgtatgatacaagtacagtgatacat |
101 |
Q |
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| T |
1956949 |
ataacacaacctctcataatcttgaatgacttctaatttcatgaaactgccctgttttgatcagcttcaaacaatgtatgatacaagtacagtgatacat |
1957048 |
T |
|
| Q |
102 |
atggcatgaaactccattttggtaagcagtcagtgagttggatttcagacggtacttactaaagtaccttcaggacaattattaaccatcttcaaggaga |
201 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1957049 |
atggcatgaaactccattttagtaagcagtcagtgagttggatttcagacagtacttactaaagtaccttcaggacaattattaaccatcttcaaggaga |
1957148 |
T |
|
| Q |
202 |
tatagaaatttagaaccgtataaat |
226 |
Q |
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||||||||||||||||||||||||| |
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| T |
1957149 |
tatagaaatttagaaccgtataaat |
1957173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 1956569 - 1956601
Alignment:
| Q |
173 |
aggacaattattaaccatcttcaaggagatata |
205 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
1956569 |
aggagaattattaaccatcttcaaggagatata |
1956601 |
T |
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