View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_57 (Length: 254)
Name: NF1243_high_57
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 28920347 - 28920555
Alignment:
| Q |
14 |
caaagggaaatagtgttgatgaagccactaagtgtaaacaataaacgtgatggttttcttctatttaactcaaatatagttaccatatattagagatgta |
113 |
Q |
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| T |
28920347 |
caaagggaaatagtgttgatgaagccactaagtgtaagcaattaacatgatggttttcttctatttaactcaaatatagttaccatatattagagatgta |
28920446 |
T |
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| Q |
114 |
tatccatctaatatgaagtatgtccacttcaacatgagatgatttcagaactgagcagatgtcttctgaagcaaatccaatttatcacacgttgtatgta |
213 |
Q |
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| T |
28920447 |
tatccatctaatatgaagtatgtccacttcaacatgagatgatttcagaactgagcagatgtcttcttaagcaaatctaatttatcacacgttgtatgta |
28920546 |
T |
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| Q |
214 |
ggatattgt |
222 |
Q |
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||||||||| |
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| T |
28920547 |
ggatattgt |
28920555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 28924214 - 28924005
Alignment:
| Q |
14 |
caaagggaaatagtgttgatgaagccactaagtgtaaacaataaacgtgatggttttcttctatttaactcaaatatagttaccatatattagagatgta |
113 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||| ||| |||| |||||||||||| |
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| T |
28924214 |
caaagggaaaaagtgttgatgaagccactaagtgtaagcaataaacatgatggttttcttctgtttctctcaaatatatttaacatacattagagatgta |
28924115 |
T |
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| Q |
114 |
tatccatctaatatgaagtatgtccacttcaacatgagatgattt-cagaactgagcagatgtcttctgaagcaaatccaatttatcacacgttgtatgt |
212 |
Q |
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| T |
28924114 |
tatctatctgatatgaagtatgtcctcttcaacattatatgatttccagaacagagcagacgtcttctgaagcaaatagaatttatcaagcattgtgtgt |
28924015 |
T |
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| Q |
213 |
aggatattgt |
222 |
Q |
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|||||||||| |
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| T |
28924014 |
aggatattgt |
28924005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 28921790 - 28921989
Alignment:
| Q |
25 |
agtgttgatgaagccactaagtgtaaacaataaacgtgatggttttcttctatttaactcaaatatagttaccatatattagagatgtatatccatctaa |
124 |
Q |
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||||||||| |||||||| ||||||| |||||||| | ||||||||||||| ||| ||||||| || ||| |||||||||||||||||||||||||||| |
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| T |
28921790 |
agtgttgataaagccacttagtgtaagcaataaacattatggttttcttctgtttctctcaaatttatttagcatatattagagatgtatatccatctaa |
28921889 |
T |
|
| Q |
125 |
tatgaagtatgtccacttcaacatgagatgattt-cagaactgagcagatgtcttctgaagcaaatccaatttatcacacgttgtatgtaggatattgtt |
223 |
Q |
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| T |
28921890 |
tatgaagtatgtccacttcaacatgagatgatttccagaacagagcagacacattctaaagtaaatctaatttatcacacgttgtatttaggatattgtt |
28921989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 31137505 - 31137607
Alignment:
| Q |
99 |
tatattagagatgtatatccatctaatatgaagtatgtccacttcaacatgaga-tgatttcagaactgagcagatgtcttctgaagcaaatccaattta |
197 |
Q |
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||||||||| |||||||| | ||||||||||||||||| |||||||||| |||| || ||| ||| |||| |||||||||| |||||||||| |||| | |
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| T |
31137505 |
tatattagatatgtatatgcctctaatatgaagtatgttcacttcaacaggagattgtttttagagatgagaagatgtcttccgaagcaaatctaattaa |
31137604 |
T |
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| Q |
198 |
tca |
200 |
Q |
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||| |
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|
| T |
31137605 |
tca |
31137607 |
T |
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