View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_66 (Length: 251)
Name: NF1243_high_66
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_66 |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 22119168 - 22119023
Alignment:
| Q |
70 |
ttcagaaacaaatctaattaatttcaaaagggaatttataaatgaaacaaaaaagatttgtttcttgttccttgtatcactaagcaatcgtgttctgtcc |
169 |
Q |
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| T |
22119168 |
ttcagaaacaaatataattaatttcaaaagggaatttataaa-------aaaaatatttgtttcatgttccttgtttcactaagcaatcctgttctgtcc |
22119076 |
T |
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| Q |
170 |
nnnnnnnctcctcaataaataaaatcaatttactttgcttctttcatcactat |
222 |
Q |
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| T |
22119075 |
tttttttctcctcaataaataaaaccaatttactttgcttctttaatcactat |
22119023 |
T |
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Target: scaffold0181 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 2546 - 2402
Alignment:
| Q |
70 |
ttcagaaacaaatctaattaatttcaaaagggaatttataaatgaaacaaaaaagatttgtttcttgttccttgtatcactaagcaatcgtgttctgtcc |
169 |
Q |
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| T |
2546 |
ttcagaaacaaatataattaatttcaaaagggaatttataaa--------aaaatatttgtttcatgttccttgtttcactaagcaatcctgttctgtcc |
2455 |
T |
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| Q |
170 |
nnnnnnnctcctcaataaataaaatcaatttactttgcttctttcatcactat |
222 |
Q |
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| T |
2454 |
tttttttctcctcaataaataaaaccaatttactttgcttcttttatcactat |
2402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 8646916 - 8647019
Alignment:
| Q |
119 |
aaaaagatttgtttcttgttccttgtatcactaagcaatcgtgttctgtccnnnnnnnctcctcaataaataaaatcaatttactttgcttctttcatca |
218 |
Q |
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|||||||||| || |||||||||||| | || |||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||| || |
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| T |
8646916 |
aaaaagatttcttccttgttccttgttttacaaagcaatcatgttttgtcctttttctctcctcaataaataaaatcactttactttgcttctttcacca |
8647015 |
T |
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| Q |
219 |
ctat |
222 |
Q |
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|||| |
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| T |
8647016 |
ctat |
8647019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 38636990 - 38636955
Alignment:
| Q |
2 |
cagtgtttgactgtgtcaaactatttcaacaaataa |
37 |
Q |
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| T |
38636990 |
cagtgtttgactgtgtcaaactgtttcaacaaataa |
38636955 |
T |
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