View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_1 (Length: 767)
Name: NF1243_low_1
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 48 - 739
Target Start/End: Complemental strand, 40512169 - 40511468
Alignment:
| Q |
48 |
caagttaaattcaattcctcaaccgagacgattattgaatgaataagagcaacaattcattcataagatctggtcttagttcaacctcagttctaaaaga |
147 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40512169 |
caagttaaactcaattcctcaaccgagacgattattgaatgaataagagcaacaattcattcataagatctggtcttagttcaacctcagttctaaaaga |
40512070 |
T |
|
| Q |
148 |
acgttgacggataagttggtttacgaataaattttattaattggataccaatataatcannnnnnnnnnn----atatttattgatacttcatactcgaa |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40512069 |
acgttgacggataagttggtttacgaataaattttattcattagataccaatataatcaattttatttttttttatatttattgatacttcatactcgaa |
40511970 |
T |
|
| Q |
244 |
ctacaacctcttctgatgagtgaattttatctaaacagaggagagtgttgaacttgactttcttggcaattgtacatgcacacgacaatccatgtaggat |
343 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
40511969 |
ctacaacctcttttgatgagtgaattttatctaaactgaggagagtgttgaacttgatttttttggcaagtgtacatgcacacgacaatccatgtaggat |
40511870 |
T |
|
| Q |
344 |
gaaaattcagcaaccacatttagacttattcataccacacccaattacttgatcagccttgtctgtgtgaaaatgcaaacatttcttgat--atatttct |
441 |
Q |
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| T |
40511869 |
gaaaattaaacaaccacatttagacttatccataccacacccaattgtttgatcagccttgtctgcgtgaaaatgcaaacatttcttgatatatatttct |
40511770 |
T |
|
| Q |
442 |
aaccaacttagaccgcaccatcaacatcttgtctttgaaactatgtccttgtccaggtttatatcaaggggctagataattaattaattagctaatctta |
541 |
Q |
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||||||||||||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40511769 |
aaccaacttagaccgcaacatcaacaccttgtctttgaacctatgtccttgtccgggtttatatcaaggggctcgataattaattaattagctaatctta |
40511670 |
T |
|
| Q |
542 |
attaaattag----nnnnnnnnacaaattagttgataaattacatattatgttttaaatttaaggatattattatcatttcaaaaataattttaattctc |
637 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
40511669 |
attaaattagttttttttttttacaaattagttgataaattacatattatgttttaaatttaaggatatttttgtcatttcaaaaataattttaattctc |
40511570 |
T |
|
| Q |
638 |
ttcgcaatttgtatccacacatacaaaggaagaggagagcatacagtctttgttaacatttcttctctctttctcttaaaataaacaatatataccaaac |
737 |
Q |
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||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40511569 |
ttcgcaatttgtatccaagcatacaaaggaagaggagagaaaacagtctttgttaacatttcttctctctttctcttaaaataaacaatatataccaaac |
40511470 |
T |
|
| Q |
738 |
ct |
739 |
Q |
| |
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|| |
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|
| T |
40511469 |
ct |
40511468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 303 - 455
Target Start/End: Original strand, 21196554 - 21196707
Alignment:
| Q |
303 |
ttcttggcaattgtacatgcacacgacaatccatgtaggatgaaaattcagcaaccacatttagacttattcataccacacccaattacttgatcagcct |
402 |
Q |
| |
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||||||| ||||||||| ||||||| ||||||| | |||||||||| |||||||||||||||||||||| || |||| || |||| ||| | ||| |
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| T |
21196554 |
ttcttggaaattgtacacgcacacggtaatccatatgtgatgaaaattaagcaaccacatttagacttatttgaactacactaaactactcgattaacct |
21196653 |
T |
|
| Q |
403 |
tgtctgtgtgaaaatgcaaaca-tttcttgatatatttctaaccaacttagacc |
455 |
Q |
| |
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|||||| | || |||||||| | || ||| ||| |||||||| ||||||||||| |
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| T |
21196654 |
tgtctgagagataatgcaaagagttccttaatacatttctaatcaacttagacc |
21196707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 16041147 - 16041210
Alignment:
| Q |
341 |
gatgaaaattcagcaaccacatttagacttattcataccacacccaattacttgatcagccttg |
404 |
Q |
| |
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|||||||||| |||||||||||||||| |||| |||||||||||||| | || ||||| ||||| |
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| T |
16041147 |
gatgaaaattaagcaaccacatttagatttatccataccacacccaactgctcgatcaaccttg |
16041210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 392
Target Start/End: Complemental strand, 31180065 - 31179961
Alignment:
| Q |
288 |
gtgttgaacttgactttcttggcaattgtacatgcacacgacaatccatgtaggatgaaaattcagcaaccacatttagacttattcataccacacccaa |
387 |
Q |
| |
|
||||||| ||||| |||||||||||||| | ||||| || |||| | || |||||||||| |||||| ||||||| | ||||| ||||||||||||| |
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| T |
31180065 |
gtgttgagcttgatcttcttggcaattgtccgcgcacatgaaaatcagtatatgatgaaaattaagcaacaacatttatatttatttataccacacccaa |
31179966 |
T |
|
| Q |
388 |
ttact |
392 |
Q |
| |
|
|||| |
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| T |
31179965 |
ctact |
31179961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 451
Target Start/End: Complemental strand, 31179865 - 31179755
Alignment:
| Q |
341 |
gatgaaaattcagcaaccacatttagacttattcataccacacccaattacttgatcagccttgtctgtgtgaaaatg-caaacatttcttgatatattt |
439 |
Q |
| |
|
|||||||||| | |||||||||||| | ||||||||||| |||||||| ||||||| ||| || || |||| |||| ||||||| ||| |||| ||| |
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| T |
31179865 |
gatgaaaattaaacaaccacatttaaatttattcatacc-gacccaattttttgatcaacctcgtttgcgtgataatgtaaaacattccttaatatgttt |
31179767 |
T |
|
| Q |
440 |
ctaaccaactta |
451 |
Q |
| |
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|||||||||||| |
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| T |
31179766 |
ctaaccaactta |
31179755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 303 - 373
Target Start/End: Original strand, 25010766 - 25010836
Alignment:
| Q |
303 |
ttcttggcaattgtacatgcacacgacaatccatgtaggatgaaaattcagcaaccacatttagacttatt |
373 |
Q |
| |
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||||| ||||| |||||||||||| ||||||| | |||||||||| |||||||||||||| ||||||| |
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| T |
25010766 |
ttcttagcaatcgtacatgcacacagtaatccatatgtgatgaaaattaagcaaccacatttaaacttatt |
25010836 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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