View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_low_100 (Length: 262)

Name: NF1243_low_100
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_low_100
NF1243_low_100
[»] chr7 (7 HSPs)
chr7 (158-234)||(21783912-21783988)
chr7 (126-156)||(16710241-16710271)
chr7 (126-156)||(17684477-17684507)
chr7 (99-129)||(42611228-42611258)
chr7 (124-156)||(4639221-4639253)
chr7 (99-127)||(27149395-27149423)
chr7 (124-156)||(37915400-37915432)
[»] chr2 (4 HSPs)
chr2 (99-142)||(15926699-15926742)
chr2 (99-129)||(9731661-9731691)
chr2 (99-129)||(18726978-18727008)
chr2 (99-129)||(43618159-43618189)
[»] chr8 (7 HSPs)
chr8 (124-156)||(44977496-44977528)
chr8 (99-129)||(8029214-8029244)
chr8 (99-129)||(26619987-26620017)
chr8 (99-129)||(42423916-42423946)
chr8 (100-129)||(41394575-41394604)
chr8 (124-156)||(8029168-8029200)
chr8 (124-156)||(19484939-19484971)
[»] chr6 (5 HSPs)
chr6 (99-129)||(16439402-16439432)
chr6 (124-156)||(1462730-1462762)
chr6 (124-156)||(6789107-6789139)
chr6 (124-156)||(10110660-10110692)
chr6 (124-156)||(31975068-31975100)
[»] chr4 (7 HSPs)
chr4 (99-129)||(872203-872233)
chr4 (99-129)||(29509422-29509452)
chr4 (99-129)||(33141034-33141064)
chr4 (124-162)||(46862253-46862291)
chr4 (124-156)||(8084917-8084949)
chr4 (124-156)||(24965806-24965838)
chr4 (124-156)||(32890631-32890663)
[»] chr3 (6 HSPs)
chr3 (99-129)||(7436918-7436948)
chr3 (124-157)||(7436858-7436891)
chr3 (124-156)||(8599682-8599714)
chr3 (124-156)||(43173648-43173680)
chr3 (124-156)||(49296840-49296872)
chr3 (124-156)||(49459135-49459167)
[»] chr1 (16 HSPs)
chr1 (99-129)||(15928302-15928332)
chr1 (99-129)||(47370930-47370960)
chr1 (99-129)||(49452420-49452450)
chr1 (99-129)||(49971051-49971081)
chr1 (124-161)||(26758336-26758373)
chr1 (124-156)||(1242639-1242671)
chr1 (124-156)||(4006094-4006126)
chr1 (124-156)||(8148076-8148108)
chr1 (124-156)||(9174617-9174649)
chr1 (124-156)||(11578456-11578488)
chr1 (124-156)||(18246884-18246916)
chr1 (158-198)||(22656622-22656662)
chr1 (124-156)||(25254295-25254327)
chr1 (124-156)||(41354167-41354199)
chr1 (124-156)||(47370884-47370916)
chr1 (124-156)||(51107929-51107961)
[»] scaffold0002 (1 HSPs)
scaffold0002 (124-156)||(16139-16171)
[»] chr5 (2 HSPs)
chr5 (124-156)||(29716217-29716249)
chr5 (124-156)||(37797461-37797493)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 21783912 - 21783988
Alignment:
Q  158 ggttgtttgtgttaattcgaataaggtgtgttagaatctatcccggtagttataggtttcgattgaattcagtttct 234  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| || |||||||||||| ||||    
T  21783912 ggttgtttgtgttaattcgaataaggtttgttagaatctatcacggtagttatagggtttgattgaattcagcttct 21783988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Original strand, 16710241 - 16710271
Alignment:
Q  126 agttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||||||||||||||||||||||||||    
T  16710241 agttgaagtaaactctcgagttgcaaaacct 16710271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Original strand, 17684477 - 17684507
Alignment:
Q  126 agttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||||||||||||||||||||||||||    
T  17684477 agttgaagtaaactctcgagttgcaaaacct 17684507  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 42611228 - 42611258
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  42611228 ggtaaactcgtacgagttctcgagtcgagtt 42611258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 4639253 - 4639221
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  4639253 cgagttgaggtaaactctcgagttgcaaaacct 4639221  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 27149395 - 27149423
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgag 127  Q
    |||||||||||||||||||||||||||||    
T  27149395 ggtaaactcgtacgagttctcgagtcgag 27149423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 37915432 - 37915400
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  37915432 cgagttgaggtaaactctcgagttgcaaaacct 37915400  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 15926699 - 15926742
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagttgaagtaaactctc 142  Q
    |||||||||||||||||||||||||||| |||| ||||||||||    
T  15926699 ggtaaactcgtacgagttctcgagtcgatttgaggtaaactctc 15926742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 9731661 - 9731691
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  9731661 ggtaaactcgtacgagttctcgagtcgagtt 9731691  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 18727008 - 18726978
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  18727008 ggtaaactcgtacgagttctcgagtcgagtt 18726978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 43618159 - 43618189
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  43618159 ggtaaactcgtacgagttctcgagtcgagtt 43618189  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 44977496 - 44977528
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||||||||||||||||||||||||||||    
T  44977496 cgagttgaagtaaactctcgagttgcaaaacct 44977528  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 8029244 - 8029214
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  8029244 ggtaaactcgtacgagttctcgagtcgagtt 8029214  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 26620017 - 26619987
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  26620017 ggtaaactcgtacgagttctcgagtcgagtt 26619987  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 42423916 - 42423946
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  42423916 ggtaaactcgtacgagttctcgagtcgagtt 42423946  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 41394575 - 41394604
Alignment:
Q  100 gtaaactcgtacgagttctcgagtcgagtt 129  Q
    ||||||||||||||||||||||||||||||    
T  41394575 gtaaactcgtacgagttctcgagtcgagtt 41394604  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 8029200 - 8029168
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  8029200 cgagttgaggtaaactctcgagttgcaaaacct 8029168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 19484939 - 19484971
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  19484939 cgagttgaggtaaactctcgagttgcaaaacct 19484971  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 16439402 - 16439432
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  16439402 ggtaaactcgtacgagttctcgagtcgagtt 16439432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 1462762 - 1462730
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  1462762 cgagttgaggtaaactctcgagttgcaaaacct 1462730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 6789107 - 6789139
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  6789107 cgagttgaggtaaactctcgagttgcaaaacct 6789139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 10110692 - 10110660
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  10110692 cgagttgaggtaaactctcgagttgcaaaacct 10110660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 31975100 - 31975068
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  31975100 cgagttgaggtaaactctcgagttgcaaaacct 31975068  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 872203 - 872233
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  872203 ggtaaactcgtacgagttctcgagtcgagtt 872233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 29509452 - 29509422
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  29509452 ggtaaactcgtacgagttctcgagtcgagtt 29509422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 33141034 - 33141064
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  33141034 ggtaaactcgtacgagttctcgagtcgagtt 33141064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 46862291 - 46862253
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacctaggttg 162  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  46862291 cgagttgaggtaaactctcgagttgcaaaaccttggttg 46862253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 8084917 - 8084949
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  8084917 cgagttgaggtaaactctcgagttgcaaaacct 8084949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 24965838 - 24965806
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  24965838 cgagttgaggtaaactctcgagttgcaaaacct 24965806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 32890631 - 32890663
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  32890631 cgagttgaggtaaactctcgagttgcaaaacct 32890663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 7436948 - 7436918
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  7436948 ggtaaactcgtacgagttctcgagtcgagtt 7436918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 7436891 - 7436858
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaaccta 157  Q
    |||||||| |||||||||||||||||||||||||    
T  7436891 cgagttgaggtaaactctcgagttgcaaaaccta 7436858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 8599682 - 8599714
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  8599682 cgagttgaggtaaactctcgagttgcaaaacct 8599714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 43173648 - 43173680
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  43173648 cgagttgaggtaaactctcgagttgcaaaacct 43173680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 49296840 - 49296872
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  49296840 cgagttgaggtaaactctcgagttgcaaaacct 49296872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 49459135 - 49459167
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  49459135 cgagttgaggtaaactctcgagttgcaaaacct 49459167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 15928302 - 15928332
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  15928302 ggtaaactcgtacgagttctcgagtcgagtt 15928332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 47370960 - 47370930
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  47370960 ggtaaactcgtacgagttctcgagtcgagtt 47370930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 49452450 - 49452420
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  49452450 ggtaaactcgtacgagttctcgagtcgagtt 49452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 49971081 - 49971051
Alignment:
Q  99 ggtaaactcgtacgagttctcgagtcgagtt 129  Q
    |||||||||||||||||||||||||||||||    
T  49971081 ggtaaactcgtacgagttctcgagtcgagtt 49971051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 26758336 - 26758373
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacctaggtt 161  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  26758336 cgagttgaggtaaactctcgagttgcaaaaccttggtt 26758373  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 1242671 - 1242639
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  1242671 cgagttgaggtaaactctcgagttgcaaaacct 1242639  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 4006094 - 4006126
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  4006094 cgagttgaggtaaactctcgagttgcaaaacct 4006126  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 8148076 - 8148108
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  8148076 cgagttgaggtaaactctcgagttgcaaaacct 8148108  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 9174617 - 9174649
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  9174617 cgagttgaggtaaactctcgagttgcaaaacct 9174649  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 11578488 - 11578456
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  11578488 cgagttgaggtaaactctcgagttgcaaaacct 11578456  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 18246916 - 18246884
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  18246916 cgagttgaggtaaactctcgagttgcaaaacct 18246884  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 22656622 - 22656662
Alignment:
Q  158 ggttgtttgtgttaattcgaataaggtgtgttagaatctat 198  Q
    |||||||||| |||||||||||| ||| |||||||||||||    
T  22656622 ggttgtttgtattaattcgaatagggtttgttagaatctat 22656662  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 25254295 - 25254327
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    ||||||||||||||||||||||||| |||||||    
T  25254295 cgagttgaagtaaactctcgagttgtaaaacct 25254327  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 41354167 - 41354199
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  41354167 cgagttgaggtaaactctcgagttgcaaaacct 41354199  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 47370916 - 47370884
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  47370916 cgagttgaggtaaactctcgagttgcaaaacct 47370884  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 51107929 - 51107961
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  51107929 cgagttgaggtaaactctcgagttgcaaaacct 51107961  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 16171 - 16139
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  16171 cgagttgaggtaaactctcgagttgcaaaacct 16139  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 29716249 - 29716217
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  29716249 cgagttgaggtaaactctcgagttgcaaaacct 29716217  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 37797493 - 37797461
Alignment:
Q  124 cgagttgaagtaaactctcgagttgcaaaacct 156  Q
    |||||||| ||||||||||||||||||||||||    
T  37797493 cgagttgaggtaaactctcgagttgcaaaacct 37797461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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