View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_107 (Length: 255)
Name: NF1243_low_107
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_107 |
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| [»] scaffold0603 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 4184363 - 4184526
Alignment:
| Q |
1 |
tgttagacaagactgtttctagtga---cttcatcggcaagttccaggccacgaagcttgacgtttcgct---cttggaaaagcttaagacaatacttat |
94 |
Q |
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| T |
4184363 |
tgttagacaagattgtttctagtgagtacttcatcggcaagttccaggccacgaagcttgacgtttcactactcttggaaaagcttaagacaatacttat |
4184462 |
T |
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| Q |
95 |
ggttcttcatgaagctgtggagacacttactttaaggctttgtcgacaactttggctgaatatg |
158 |
Q |
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| T |
4184463 |
ggttcttcatgaagctgtggagacacttactttaaggctttgtcgacaactttggctgaatatg |
4184526 |
T |
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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 5964970 - 5965060
Alignment:
| Q |
1 |
tgttagacaagactgtttctagtgacttcatcggcaagttccaggccacgaagcttgacgtttcgctcttggaaaagcttaagacaatact |
91 |
Q |
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| T |
5964970 |
tgttaaacaagattgtttctagtcagttcgtcgacaacttccacagcactaaacttgatgtttcactcttggaaaagcttaagacaatact |
5965060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 5668 - 5530
Alignment:
| Q |
1 |
tgttagacaagactgtttctagtgacttcatcggcaagttccaggccacgaagcttgacgtttcgctcttggaaaagcttaagacaatacttatg---gt |
97 |
Q |
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| T |
5668 |
tgttaaacaagattgtttctagtgacttcatcggcaacttccaggccatgaagcttgacgtttcactcttggaaaagcttaagacaatacttgtgcccgt |
5569 |
T |
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| Q |
98 |
tcttcatgaagctgtggagacacttactttaaggctttg |
136 |
Q |
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| T |
5568 |
tcttcttgatgctgtagacatacttactttcgggctttg |
5530 |
T |
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