View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_110 (Length: 253)
Name: NF1243_low_110
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_110 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 41551424 - 41551187
Alignment:
| Q |
16 |
atctggagcctggaatcgaaactttgatcagtaatttgcgaccaaaattcgaaaagttcttccctgtttatcttttcaaccttcaaccttcgttttcgtc |
115 |
Q |
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| T |
41551424 |
atctggagcctggaatcgaaactttgatcagtaatttgcgaccaaaattcgaaaagttcttccctgtttatcttttcaaccttcaaccttcgttttcgtc |
41551325 |
T |
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| Q |
116 |
caagagcatcaaagagttccagtgcaaattccttcgaatctttcataccttcagataattaaattactattaagactctttcaagtcaaaacgaaacatt |
215 |
Q |
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| T |
41551324 |
caagagcatcaaagagttccagtgcaaattccttcgaatctttcataccttcagataattaaattactattaagactctttcaagtcaaaacgaaacatt |
41551225 |
T |
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| Q |
216 |
aatttcaagatctaaacaatatttaggccataaattca |
253 |
Q |
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| T |
41551224 |
aatttcaagatctaaacaatatttaggccataaattca |
41551187 |
T |
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