View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_low_111 (Length: 252)

Name: NF1243_low_111
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_low_111
NF1243_low_111
[»] chr1 (10 HSPs)
chr1 (1-242)||(15010640-15010881)
chr1 (1-242)||(15001747-15001988)
chr1 (1-236)||(15036660-15036895)
chr1 (1-231)||(15024757-15024987)
chr1 (1-231)||(15032098-15032328)
chr1 (1-236)||(15016755-15016990)
chr1 (24-229)||(14503645-14503850)
chr1 (3-229)||(14467445-14467671)
chr1 (5-229)||(14532989-14533213)
chr1 (40-229)||(14522868-14523057)
[»] scaffold0400 (2 HSPs)
scaffold0400 (5-229)||(12423-12647)
scaffold0400 (115-217)||(6245-6347)
[»] scaffold0365 (2 HSPs)
scaffold0365 (5-229)||(13066-13290)
scaffold0365 (115-217)||(6889-6991)
[»] chr7 (1 HSPs)
chr7 (40-163)||(15677392-15677515)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 15010640 - 15010881
Alignment:
Q  1 caccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgtt 100  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15010640 caccagaactaggaagtgcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgtt 15010739  T
Q  101 gttcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15010740 gttcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataat 15010839  T
Q  201 ttgagtggcttcatccctaaaaaacttggtatgttgcctatg 242  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  15010840 ttgagtggcttcatccctaaaaaacttggtatgttgtctatg 15010881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 15001747 - 15001988
Alignment:
Q  1 caccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  15001747 caccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgcgaaaaattccaaaggagttagaaaacttatctttgtt 15001846  T
Q  101 gttcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataat 200  Q
    | |||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15001847 gatcaaactctcgttaagtaacaatcatctttatggagaagttccagtacaaattgcatcattgcatcaactaactgcattggagcttgcaacaaataat 15001946  T
Q  201 ttgagtggcttcatccctaaaaaacttggtatgttgcctatg 242  Q
    |||||||| ||||||||| ||||||||||||||||| |||||    
T  15001947 ttgagtggattcatccctgaaaaacttggtatgttgtctatg 15001988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15036660 - 15036895
Alignment:
Q  1 caccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||    
T  15036660 caccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaacgatctaatgggaaaaattccaaaggagctaaaatatttatctttgtt 15036759  T
Q  101 gttcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataat 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  15036760 gttcaaactctcgttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaacaaataac 15036859  T
Q  201 ttgagtggcttcatccctaaaaaacttggtatgttg 236  Q
    || |||||||||||||   |||||||||||||||||    
T  15036860 ttaagtggcttcatcctggaaaaacttggtatgttg 15036895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 15024757 - 15024987
Alignment:
Q  1 caccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgtt 100  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  15024757 caccagagctaggcagcgcaacaaatttacaggagcttaacttgtcttcaaaccatctaacgggaaaaattccaaaggagctagaaaacttatctttgtt 15024856  T
Q  101 gttcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataat 200  Q
    | |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||    
T  15024857 gatcaaactctcgttaagtaacaatcacctttctggagaagttcctgtacaaattgcatcattgcacgagctaactgcattggagcttgcaacaaataat 15024956  T
Q  201 ttgagtggcttcatccctaaaaaacttggta 231  Q
    |||||||||||||||||||||| ||||||||    
T  15024957 ttgagtggcttcatccctaaaagacttggta 15024987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 15032098 - 15032328
Alignment:
Q  1 caccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgtt 100  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||    
T  15032098 caccagagctaggcagcgcaacaaatttacaggagcttaacttgtcttcaaaccatctaacgggaaaaattccaaaggagctagaaaacttatctttgtt 15032197  T
Q  101 gttcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataat 200  Q
    | |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||    
T  15032198 gatcaaactctcgttaagtaacaatcacctttctggagaagttcctgtacaaattgcatcattgcacgagctaactgcattggagcttgcaacaaataat 15032297  T
Q  201 ttgagtggcttcatccctaaaaaacttggta 231  Q
    |||||||||||||||||||||| ||||||||    
T  15032298 ttgagtggcttcatccctaaaagacttggta 15032328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15016755 - 15016990
Alignment:
Q  1 caccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgtt 100  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||| ||||||||||||||| ||||| |||||||||||||    
T  15016755 caccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagctagaaaacttatctttgtt 15016854  T
Q  101 gttcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataat 200  Q
    | |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||  || ||||||||||||||||||||  |||||||    
T  15016855 gatcaaactctcgttaagtaacaatcatctttctggagaagttcctgaacaaattgaatcattgcacgaattaactgcattggagcttgcagcaaataat 15016954  T
Q  201 ttgagtggcttcatccctaaaaaacttggtatgttg 236  Q
    || ||||||||||||||| |||||||||||||||||    
T  15016955 ttcagtggcttcatccctgaaaaacttggtatgttg 15016990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 14503645 - 14503850
Alignment:
Q  24 aatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttcaaactctccttaagtaaca 123  Q
    |||||||| || ||||||||||| ||||||||||| |  |||||||||||||||||  ||| | |||| ||||||||| ||||||||||  |||||||||    
T  14503645 aatttacatgaacttaacttgtcatcaaaccatcttactggaaaaattccaaaggatctaggaaacttgtctttgttgatcaaactctcgataagtaaca 14503744  T
Q  124 atcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaa 223  Q
    |||||||||||||||| |||||| |||||||||||||||||||   ||||||| | ||||||||||||| ||||||||| |||||||||||||||| ||     
T  14503745 atcatctttctggagaggttcctatacaaattgcatcattgcaagcactaactaccttggagcttgcaacaaataatttaagtggcttcatccctagaag 14503844  T
Q  224 acttgg 229  Q
    ||||||    
T  14503845 acttgg 14503850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 14467445 - 14467671
Alignment:
Q  3 ccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgt 102  Q
    |||||||||||| |||||||||||||||| || || ||| |||||||||||||||| | ||||||||||||||||||| |||||  |||||||||||||     
T  14467445 ccagaactaggccgagcaacaaatttacatgaactaaacctgtcttcaaaccatcttacgggaaaaattccaaaggagctagaaagcttatctttgttga 14467544  T
Q  103 tcaaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataattt 202  Q
    || |||||||  ||||||||||||||||||| ||||||||||||| |||| |||||||||||||  |||||  | | ||||||||| ||| |||||||||    
T  14467545 tccaactctcggtaagtaacaatcatctttcaggagaagttcctgcacaagttgcatcattgcaaaaactagataccttggagctttcaacaaataattt 14467644  T
Q  203 gagtggcttcatccctaaaaaacttgg 229  Q
     ||||| |  ||||| ||| |||||||    
T  14467645 aagtggttcaatcccaaaacaacttgg 14467671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 14533213 - 14532989
Alignment:
Q  5 agaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttc 104  Q
    |||||||||  |||||||| | ||||| || |||||  |||||||||||||||| |  |||||||||||| ||||| ||| | |||||||||||||  ||    
T  14533213 agaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccagaggagctaggaaacttatctttgttaatc 14533114  T
Q  105 aaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttga 204  Q
    ||||||||  ||| ||||||| ||||||  ||||||||||||||||||||||||||| ||||   ||||||||| |||||||||| || ||||||||| |    
T  14533113 aaactctcgataaataacaataatcttttgggagaagttcctgtacaaattgcatcactgcaggcactaactgccttggagcttgaaaaaaataatttaa 14533014  T
Q  205 gtggcttcatccctaaaaaacttgg 229  Q
    ||||||||||||||| || ||||||    
T  14533013 gtggcttcatccctagaagacttgg 14532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 14523057 - 14522868
Alignment:
Q  40 acttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttcaaactctccttaagtaacaatcatctttctggaga 139  Q
    ||||||| ||||| || || || |||||||||||||||||  ||| | ||||||||    || || |||||||  ||||||| ||||||||||| |||||    
T  14523057 acttgtcctcaaatcaacttataggaaaaattccaaaggatctaggaaacttatctgcactgatccaactctcgataagtaataatcatctttcgggaga 14522958  T
Q  140 agttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcatccctaaaaaacttgg 229  Q
    ||||||| | || ||||||||||||||| |||||||| ||||||| ||||||| ||||||||| ||||| || |||||| ||||||||||    
T  14522957 agttcctatgcagattgcatcattgcatgaactaactacattggatcttgcaacaaataatttaagtggttttatccctgaaaaacttgg 14522868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 12423 - 12647
Alignment:
Q  5 agaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttc 104  Q
    |||||||||  |||||||| | ||||| || |||||  |||||||||||||||| |  |||||||||||||||||| ||| | |||||||||||||  ||    
T  12423 agaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccaaaggagctaggaaacttatctttgttaatc 12522  T
Q  105 aaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttga 204  Q
    ||||||||  ||| ||||||| ||||||  ||||||||||||||||||||||||||| ||||   ||||||||| |||||||||| || ||||||||| |    
T  12523 aaactctcgataaataacaataatcttttgggagaagttcctgtacaaattgcatcactgcaggcactaactgccttggagcttgaaaaaaataatttaa 12622  T
Q  205 gtggcttcatccctaaaaaacttgg 229  Q
    ||||||||||||||| || ||||||    
T  12623 gtggcttcatccctagaagacttgg 12647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 6245 - 6347
Alignment:
Q  115 taagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcat 214  Q
    |||||| ||||||||||   ||||||||||||| ||||||||||| ||||||| || |||||   ||||||||||||| ||||||||| |||||||||||    
T  6245 taagtagcaatcatcttgtaggagaagttcctgaacaaattgcattattgcataaaataactatcttggagcttgcaacaaataatttcagtggcttcat 6344  T
Q  215 ccc 217  Q
    |||    
T  6345 ccc 6347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 13066 - 13290
Alignment:
Q  5 agaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttc 104  Q
    |||||||||  |||||||| | ||||| || |||||  |||||||||||||||| |  |||||||||||||||||| ||| | |||||||||||||  ||    
T  13066 agaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccaaaggagctaggaaacttatctttgttaatc 13165  T
Q  105 aaactctccttaagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttga 204  Q
    ||||||||  ||| ||||||| ||||||  ||||||||||||||||||||||||||| ||||   ||||||||| |||||||||| || ||||||||| |    
T  13166 aaactctcgataaataacaataatcttttgggagaagttcctgtacaaattgcatcactgcaggcactaactgccttggagcttgaaaaaaataatttaa 13265  T
Q  205 gtggcttcatccctaaaaaacttgg 229  Q
    ||||||||||||||| || ||||||    
T  13266 gtggcttcatccctagaagacttgg 13290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 6889 - 6991
Alignment:
Q  115 taagtaacaatcatctttctggagaagttcctgtacaaattgcatcattgcatcaactaactgcattggagcttgcaataaataatttgagtggcttcat 214  Q
    |||||| ||||||||||   ||||||||||||| ||||||||||| ||||||| || |||||   ||||||||||||| ||||||||| |||||||||||    
T  6889 taagtagcaatcatcttgtaggagaagttcctgaacaaattgcattattgcataaaataactatcttggagcttgcaacaaataatttcagtggcttcat 6988  T
Q  215 ccc 217  Q
    |||    
T  6989 ccc 6991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 163
Target Start/End: Complemental strand, 15677515 - 15677392
Alignment:
Q  40 acttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaatacttatctttgttgttcaaactctccttaagtaacaatcatctttctggaga 139  Q
    |||| |||||||||||||| || || |||||||||||||||||||   ||||  || |||||   | |||||  ||||| ||||| |||||||||||  |    
T  15677515 acttatcttcaaaccatcttattggtaaaattccaaaggagttaggcaacttgactatgttgggtagactctatttaagcaacaaccatctttctggtaa 15677416  T
Q  140 agttcctgtacaaattgcatcatt 163  Q
     ||||| |||||||||||||||||    
T  15677415 tgttccggtacaaattgcatcatt 15677392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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