View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_117 (Length: 251)
Name: NF1243_low_117
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_117 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 34349294 - 34349530
Alignment:
| Q |
5 |
tgtcgaagaatatagtaaaacaaatcaaataaagcaagaaagctctcacacaccactgtatcagattatttccctcattctcccactaagttgccatatt |
104 |
Q |
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| T |
34349294 |
tgtcgatgaatatagtaaaacaaatcaaataaagcaagaaagctctcacacaccattgtatcggattatttccctcattctcccactaagttgccatatt |
34349393 |
T |
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| Q |
105 |
gaggtgctcctcacgtattctctttaggaagggaatatttgaaaaagcaccaaactagttagctctctcatcaatcgcagtatgctcgacaacaccaaac |
204 |
Q |
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| T |
34349394 |
gaggtgctcctcgcgtattctctttaggaagggaatatttgaaaaagcaccaaactagttagctctctcatcaatcgcagtatgctcgacaacaccaaac |
34349493 |
T |
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| Q |
205 |
aagtcaatcatcaactggatacccgtctcctgagaga |
241 |
Q |
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| T |
34349494 |
aagtcaatcgtcaactggatacccgtctcctgagaga |
34349530 |
T |
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Back To:
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 16782424 - 16782302
Alignment:
| Q |
80 |
cattctcccactaagttgccatattgaggtgctcctcacgtattctctttaggaagggaatatttgaaaaagcaccaaactagttagctctctcatcaat |
179 |
Q |
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|||||||| ||| |||| |||||||||||||||| ||| ||||| |||||||| ||||||||| |||| | ||||||| || | | | ||||||||| |
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| T |
16782424 |
cattctccaactgagtttccatattgaggtgctcgtcatatattccctttaggagtggaatatttataaaatccccaaactggtgatcacactcatcaat |
16782325 |
T |
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| Q |
180 |
cgcagtatgctcgacaacaccaa |
202 |
Q |
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| T |
16782324 |
tgcacgatgctcgacaacaccaa |
16782302 |
T |
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