View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_12 (Length: 494)
Name: NF1243_low_12
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 249 - 465
Target Start/End: Complemental strand, 9418200 - 9417984
Alignment:
| Q |
249 |
ctatgatgctttggaagagcaactttagaaggtcatccaactcagaggtaataataattttaacatgttttttcttacttgaaaagtgatatgtttaact |
348 |
Q |
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| T |
9418200 |
ctatgatgctttggaagagcaactttagaaggtcatccaactcagaggtaataataattttaacatgttttttcttaattgaaaagtgacatgtttaact |
9418101 |
T |
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| Q |
349 |
aacaattttttataaaccttgtagcctattggtagtgctgtattgactgggataactaaaaagttatttcaaagtccatctcacagatcaaagatacctg |
448 |
Q |
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| T |
9418100 |
aacaattttttataaaccttgtagcctattggtagtgctgtattgactgggataactaaaaagttatttcaaagtccatctcacagatcaaagatacctg |
9418001 |
T |
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| Q |
449 |
ttaccaatccatatttg |
465 |
Q |
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||||||||||||||||| |
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| T |
9418000 |
ttaccaatccatatttg |
9417984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 57 - 462
Target Start/End: Complemental strand, 17813854 - 17813463
Alignment:
| Q |
57 |
caacagaaatcattgatgactttaacaatgttattgtggatgtgtctgacagtgatgatgacacaaaaggaaagaaaatgcataggtcagcaatgaatgg |
156 |
Q |
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| T |
17813854 |
caacataaatctttgatgaccttaacaatgttattgtggatgtgtctgacaatgataatgacacaaaagaaaagaaagtgcataggtcagtgttgaatgg |
17813755 |
T |
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| Q |
157 |
aatgtataacaacactatgtttgaaatgaaaccacctctcccaaaagagtggaccacaggtgaaaaatcaggtgttaaggacaacacttctgctatgatg |
256 |
Q |
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| T |
17813754 |
aatgtatggcaacattatatttggaatgaaaccaactctcctaaaagagtggaacacaggtg------------ttaaggacaacgattttgctatgatg |
17813667 |
T |
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| Q |
257 |
ctttggaagagcaactttagaaggtcatccaactcagaggtaataataattttaacatgttttttcttacttgaaaagtgatatgtttaactaacaattt |
356 |
Q |
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| T |
17813666 |
ttttgcaagagcaactt-ataaggtcatccaactcagaggtaataattattttaacgtgttttttcttacttgaaaagtgatatgtttaattaacgatct |
17813568 |
T |
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| Q |
357 |
tttataaaccttgtagcctattggtagtgctgtattgactgggataactaaaaagttatttcaaagtccatctcacagatcaaagatacctgttaccaat |
456 |
Q |
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|| |||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
17813567 |
tt-ataatccttgtagcctattggcagtactggattgactgggataactaaaaagttatttcaaagtccatctcacatatcaaggatacctgttaccaat |
17813469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 245 - 465
Target Start/End: Original strand, 12003378 - 12003597
Alignment:
| Q |
245 |
tctgctatgatgctttggaagagcaactttagaaggtcatccaactcagaggtaataataattttaacatgttttttcttacttgaaaagtgatatgttt |
344 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12003378 |
tctgctatgatgctttgcaagagcaactttagaaggtcatccaactcagaggtaataataattt-aacatgttttttcttacttgaaaagtgatatgttt |
12003476 |
T |
|
| Q |
345 |
aactaacaattttttataaaccttgtagcctattggtagtgctgtattgactgggataactaaaaagttatttcaaagtccatctcacagatcaaagata |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12003477 |
aactaacaattttttataaaccttgtagcctattggtagtgctgtattgactaggataactaaaaagttatttcaaagtccatctcacagatcaaagata |
12003576 |
T |
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| Q |
445 |
cctgttaccaatccatatttg |
465 |
Q |
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| T |
12003577 |
catgttaccaatccatatttg |
12003597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 53 - 252
Target Start/End: Original strand, 12001940 - 12002139
Alignment:
| Q |
53 |
aaggcaacagaaatcattgatgactttaacaatgttattgtggatgtgtctgacagtgatgatgacacaaaaggaaagaaaatgcataggtcagcaatga |
152 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
12001940 |
aaggcaacaaaaatcattgatgactttaacaatgttattgtggatgtgtctgacggtgatgatgacacaaaaggaaagaaagtgcataggtcagtgatga |
12002039 |
T |
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| Q |
153 |
atggaatgtataacaacactatgtttgaaatgaaaccacctctcccaaaagagtggaccacaggtgaaaaatcaggtgttaaggacaacacttctgctat |
252 |
Q |
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||||||||||||| |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12002040 |
atggaatgtataataacactatatttggaatgaaaccacctctcctaaaagagtggaccacaggtgaaaaatcaggtgttaaggacaacacttttgctat |
12002139 |
T |
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