View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_120 (Length: 251)
Name: NF1243_low_120
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_120 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 43673882 - 43673751
Alignment:
| Q |
1 |
cactgcttgggtcaacagcaccataagtccatgcatctctatggttcccaagaagaacatggcgatcaggttcttctgatccttttatgacagcaaaaac |
100 |
Q |
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| T |
43673882 |
cactgcttggatcaacagcaccataagtccatgcatctctatggttcccaagaagaacatggcgatcaggttcttctgatccttttatgacagcaaaaac |
43673783 |
T |
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| Q |
101 |
attttgaatggtggccactttcttttcaccct |
132 |
Q |
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| T |
43673782 |
attttgaatggtggccattttcttttcaccct |
43673751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 43400708 - 43400810
Alignment:
| Q |
30 |
catgcatctctatggttcccaagaagaacatggcgatcaggttcttctgatccttttatgacagcaaaaacattttgaatggtggccactttcttttcac |
129 |
Q |
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||||||| ||||||||||||||| ||||| |||| |||||||||||||||||||||||| |||| | |||||||||||||| ||| | | |||||||||| |
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| T |
43400708 |
catgcatttctatggttcccaagcagaacttggcaatcaggttcttctgatccttttatcacagaagaaacattttgaatgatggtcgccttcttttcac |
43400807 |
T |
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| Q |
130 |
cct |
132 |
Q |
| |
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||| |
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| T |
43400808 |
cct |
43400810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 43673698 - 43673643
Alignment:
| Q |
185 |
ctattacaagattaagcttaactgttttgttcctcttttttaacaccacaattcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43673698 |
ctattacaagattaagcttaactgttttgttcctcttttttaacaccacaattcat |
43673643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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