View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_low_124 (Length: 249)

Name: NF1243_low_124
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_low_124
NF1243_low_124
[»] chr3 (3 HSPs)
chr3 (134-249)||(51925874-51925989)
chr3 (127-249)||(28690188-28690310)
chr3 (39-102)||(51925784-51925850)
[»] chr8 (5 HSPs)
chr8 (142-249)||(26130089-26130196)
chr8 (169-212)||(21123161-21123204)
chr8 (39-102)||(26130227-26130296)
chr8 (166-199)||(10261100-10261133)
chr8 (161-205)||(27286922-27286966)
[»] chr4 (8 HSPs)
chr4 (152-249)||(26070712-26070809)
chr4 (133-248)||(6020437-6020553)
chr4 (161-248)||(42912409-42912497)
chr4 (161-249)||(8069560-8069644)
chr4 (161-199)||(51702161-51702199)
chr4 (56-108)||(48804206-48804261)
chr4 (142-190)||(48804131-48804179)
chr4 (45-100)||(26070855-26070913)
[»] chr2 (9 HSPs)
chr2 (132-249)||(28772055-28772172)
chr2 (133-241)||(20262744-20262851)
chr2 (161-205)||(26062899-26062943)
chr2 (161-205)||(26068638-26068682)
chr2 (158-205)||(32184062-32184109)
chr2 (45-108)||(20262662-20262728)
chr2 (183-248)||(13135509-13135575)
chr2 (158-186)||(31615634-31615662)
chr2 (169-205)||(36658755-36658791)
[»] chr1 (5 HSPs)
chr1 (127-247)||(24886597-24886716)
chr1 (45-108)||(24886726-24886792)
chr1 (161-212)||(25078542-25078593)
chr1 (161-212)||(32839224-32839275)
chr1 (161-199)||(40583037-40583075)
[»] chr7 (4 HSPs)
chr7 (186-240)||(26287344-26287399)
chr7 (161-209)||(12385862-12385910)
chr7 (133-185)||(26286052-26286104)
chr7 (161-209)||(34935384-34935432)
[»] chr5 (4 HSPs)
chr5 (161-212)||(15195960-15196011)
chr5 (161-213)||(12658521-12658573)
chr5 (161-205)||(17197721-17197765)
chr5 (161-205)||(17773648-17773692)
[»] scaffold0527 (2 HSPs)
scaffold0527 (166-205)||(3095-3134)
scaffold0527 (166-205)||(11158-11197)
[»] chr6 (1 HSPs)
chr6 (161-248)||(9513164-9513252)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 51925874 - 51925989
Alignment:
Q  134 tgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagccaaaacg 233  Q
    ||||||| ||||||||| ||||| || ||||||||||||||||||||| |||||| ||||||||||||| || |||||||||||||||||||||||| ||    
T  51925874 tgaatgtttagagtatcaaggtaggcgtatgaatcgtctgccaacacataaacgacccaaggtccaacagctccctaaaaaacttcagcaagccaaagcg 51925973  T
Q  234 ccctttcgggccaaat 249  Q
    ||||||||||||||||    
T  51925974 ccctttcgggccaaat 51925989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 127 - 249
Target Start/End: Complemental strand, 28690310 - 28690188
Alignment:
Q  127 cgcatcgtgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagc 226  Q
    |||| ||||||||| || |||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||    
T  28690310 cgcagcgtgaatgtttatagtatcgaggtaagcgtatgaatcgcctgccaacacataaacgatccaaggtccaacaacttcctaaaaaaattcaacaagc 28690211  T
Q  227 caaaacgccctttcgggccaaat 249  Q
    |||| |||| ||||| |||||||    
T  28690210 caaagcgccttttcgagccaaat 28690188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 51925784 - 51925850
Alignment:
Q  39 taaataaaaacaactcaaaacaacattactacgg---gcccagcgaacccacgtgtggatacgaaac 102  Q
    |||||||||||| || ||||||||| |||||| |   ||||| ||||||||| ||||||||||||||    
T  51925784 taaataaaaacagcttaaaacaacactactacagccagcccaacgaacccacatgtggatacgaaac 51925850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 26130196 - 26130089
Alignment:
Q  142 tagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagccaaaacgccctttcg 241  Q
    ||||||||| ||||| || ||||||||||||||||| ||||||||||| |||| ||||||| || |||||||||| ||||||||||||| ||||||||||    
T  26130196 tagagtatctaggtaggcgtatgaatcgtctgccaaaacagaaacgattcaagatccaacagctccctaaaaaacatcagcaagccaaagcgccctttcg 26130097  T
Q  242 ggccaaat 249  Q
    ||||||||    
T  26130096 ggccaaat 26130089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 21123204 - 21123161
Alignment:
Q  169 gtctgccaacacagaaacgatccaaggtccaacaacttcctaaa 212  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||    
T  21123204 gtctgccaacacagaaacgattcaagttccaacaactccctaaa 21123161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 26130296 - 26130227
Alignment:
Q  39 taaataaaaacaactcaaaacaacattactacgg------gcccagcgaacccacgtgtggatacgaaac 102  Q
    ||||| |||||||||| |||||||| |||||| |      ||||||||||||||||||||||||||||||    
T  26130296 taaatgaaaacaactctaaacaacagtactactgcagacagcccagcgaacccacgtgtggatacgaaac 26130227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 10261100 - 10261133
Alignment:
Q  166 atcgtctgccaacacagaaacgatccaaggtcca 199  Q
    ||||||||||||||||||||||||||||| ||||    
T  10261100 atcgtctgccaacacagaaacgatccaagttcca 10261133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 27286966 - 27286922
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    |||||||||||||||||||||||||| || |||| |||| |||||    
T  27286966 tatgaatcgtctgccaacacagaaacaattcaagatccatcaact 27286922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 26070809 - 26070712
Alignment:
Q  152 aggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagccaaaacgccctttcgggccaaat 249  Q
    ||||| |||| ||||||||| |||||||||||||||| |||||||||||||||| |||||||||| || |||||||||| ||||||||||||||||||    
T  26070809 aggtaggcatttgaatcgtccgccaacacagaaacgacccaaggtccaacaactccctaaaaaacatcggcaagccaaagcgccctttcgggccaaat 26070712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 6020553 - 6020437
Alignment:
Q  133 gtgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagcca-aaa 231  Q
    |||||||| ||||||||| | ||| |  |||||||||||| |||||| ||||||| |||||||||||| | || |||||||||| ||| ||| ||| |||    
T  6020553 gtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttccaaggtccaaaagctccctaaaaaacatcaacaaaccataaa 6020454  T
Q  232 cgccctttcgggccaaa 248  Q
    ||||||||||| |||||    
T  6020453 cgccctttcggaccaaa 6020437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 42912497 - 42912409
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagcca-aaacgccctttcgggccaaa 248  Q
    |||||||||||||| ||||||||| ||||||||||||||||| || ||| |||||| ||||||||||| ||| ||||||| ||| ||||    
T  42912497 tatgaatcgtctgctaacacagaagcgatccaaggtccaacagctccctgaaaaacatcagcaagccataaatgcccttttggggcaaa 42912409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 8069644 - 8069560
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagccaaaacgccctttcgggccaaat 249  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||    |||||||| |||  ||||||||| |||||||    
T  8069644 tatgaatcgtctgtcaacacagaaacgattcaaggtccaacaactccctaaaaa----cagcaagcgaaagtgccctttcgagccaaat 8069560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 51702199 - 51702161
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtcca 199  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  51702199 tatgaatcgtctgccaaaacagaaacgatccaaggtcca 51702161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 48804261 - 48804206
Alignment:
Q  56 aaacaacattactacgg---gcccagcgaacccacgtgtggatacgaaactgaact 108  Q
    |||||||| ||||||||   |||||||||||||||||||||||||||||| |||||    
T  48804261 aaacaacactactacggacagcccagcgaacccacgtgtggatacgaaaccgaact 48804206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 48804179 - 48804131
Alignment:
Q  142 tagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatc 190  Q
    ||||||||| ||||| || ||||||||||||||||||||| ||||||||    
T  48804179 tagagtatcaaggtaggcgtatgaatcgtctgccaacacataaacgatc 48804131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 26070913 - 26070855
Alignment:
Q  45 aaaacaactcaaaacaacattactacgg---gcccagcgaacccacgtgtggatacgaa 100  Q
    |||||||||| |||||||| ||||||||   || |||||||||||| ||||||||||||    
T  26070913 aaaacaactctaaacaacactactacggatagcgcagcgaacccacatgtggatacgaa 26070855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 249
Target Start/End: Original strand, 28772055 - 28772172
Alignment:
Q  132 cgtgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagccaaaa 231  Q
    ||||||||| ||||||||| ||||| |  |||||||||| ||||| ||||||||  ||||||||||||||| || ||||||| | ||||||||| ||||     
T  28772055 cgtgaatgtttagagtatcaaggtaggtgtatgaatcgtttgccagcacagaaatcatccaaggtccaacagctccctaaaacatttcagcaagtcaaag 28772154  T
Q  232 cgccctttcgggccaaat 249  Q
    ||||||||||||||||||    
T  28772155 cgccctttcgggccaaat 28772172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 20262744 - 20262851
Alignment:
Q  133 gtgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagccaaaac 232  Q
    ||||| || ||||||||  ||||| || ||||||||||||||||||||||||||||| |||||||||||| || ||| ||||||  |||||||||||| |    
T  20262744 gtgaaagtttagagtattaaggtaggcgtatgaatcgtctgccaacacagaaacgattcaaggtccaacagctccct-aaaaacagcagcaagccaaagc 20262842  T
Q  233 gccctttcg 241  Q
    |||||||||    
T  20262843 gccctttcg 20262851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 26062899 - 26062943
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  26062899 tatgaatcgtctgccaacacataaacgatccaagttccaacaact 26062943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 26068638 - 26068682
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  26068638 tatgaatcgtctgccaacacataaacgatccaagttccaacaact 26068682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 32184062 - 32184109
Alignment:
Q  158 gcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  32184062 gcatatgaatcatctgtcaacacagaaacgatccaaggtccagcaact 32184109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 20262662 - 20262728
Alignment:
Q  45 aaaacaactcaaaacaacattactacgggc---ccagcgaacccacgtgtggatacgaaactgaact 108  Q
    |||||||||| |||||||| |||||||| |   ||||||||||||||| ||||||||||| ||||||    
T  20262662 aaaacaactctaaacaacaatactacggacaacccagcgaacccacgtatggatacgaaattgaact 20262728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 13135509 - 13135575
Alignment:
Q  183 aaacgatccaaggtccaacaacttcctaaaaaacttcagcaagcca-aaacgccctttcgggccaaa 248  Q
    |||||||||||| |||||||||| ||| | |||  |||||||| || ||||||||||||||||||||    
T  13135509 aaacgatccaagttccaacaactcccttacaaaagtcagcaagtcataaacgccctttcgggccaaa 13135575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 186
Target Start/End: Original strand, 31615634 - 31615662
Alignment:
Q  158 gcatatgaatcgtctgccaacacagaaac 186  Q
    |||||||||||||||||||||||||||||    
T  31615634 gcatatgaatcgtctgccaacacagaaac 31615662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 36658791 - 36658755
Alignment:
Q  169 gtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  36658791 gtctgccaacacagaaacgacccaagttccaacaact 36658755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 24886716 - 24886597
Alignment:
Q  127 cgcatcgtgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagc 226  Q
    ||||| ||||| || ||||||||  ||||| | ||||||||||||| |||||||||||||||| |||||||||||| | |||  |||||| |||||||||    
T  24886716 cgcatagtgaaagtttagagtattaaggtaggaatatgaatcgtctaccaacacagaaacgattcaaggtccaacagc-tccataaaaacatcagcaagc 24886618  T
Q  227 caaaacgccctttcgggccaa 247  Q
    |||| ||||||||||| ||||    
T  24886617 caaagcgccctttcggaccaa 24886597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 24886792 - 24886726
Alignment:
Q  45 aaaacaactcaaaacaacattactacgg---gcccagcgaacccacgtgtggatacgaaactgaact 108  Q
    |||||||||| |||||||| |||||| |   ||||||||||||||||| |||||||||||| |||||    
T  24886792 aaaacaactctaaacaacactactacagacagcccagcgaacccacgtatggatacgaaaccgaact 24886726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 25078542 - 25078593
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaa 212  Q
    ||||||||||||||||||| |||||| || |||| |||||||||| ||||||    
T  25078542 tatgaatcgtctgccaacagagaaacaattcaagttccaacaactccctaaa 25078593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 32839224 - 32839275
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaa 212  Q
    |||||||| ||| || |||||||||||||||||| |||||||||| ||||||    
T  32839224 tatgaatcatctacctacacagaaacgatccaagttccaacaactccctaaa 32839275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 40583037 - 40583075
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtcca 199  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  40583037 tatgaatcgtctgccaacatagaaacgatccaagttcca 40583075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 26287344 - 26287399
Alignment:
Q  186 cgatccaaggtccaacaacttcctaaaaaacttcagcaagcca-aaacgccctttc 240  Q
    ||||||||||||||||||||  ||||||||| ||||||||||| ||||||||||||    
T  26287344 cgatccaaggtccaacaactatctaaaaaacatcagcaagccataaacgccctttc 26287399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 12385910 - 12385862
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcct 209  Q
    ||||||| |||| ||||||||||||||||| ||| ||||||||||||||    
T  12385910 tatgaatagtctaccaacacagaaacgatctaagttccaacaacttcct 12385862  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 26286052 - 26286104
Alignment:
Q  133 gtgaatgtgtagagtatcgaggtatgcatatgaatcgtctgccaacacagaaa 185  Q
    ||||| || ||||||||| | ||| || |||||||||||||||||||||||||    
T  26286052 gtgaaagtttagagtatcaaagtaggcgtatgaatcgtctgccaacacagaaa 26286104  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 34935432 - 34935384
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcct 209  Q
    ||||||||||||||||||||| |||| || ||| ||||| |||||||||    
T  34935432 tatgaatcgtctgccaacacataaacaattcaatgtccatcaacttcct 34935384  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 15196011 - 15195960
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaa 212  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||| ||||||    
T  15196011 tatgaatcggctgccaacacagaaacgattcaagttccaacaactccctaaa 15195960  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 12658573 - 12658521
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaa 213  Q
    |||| ||| |||||||||||| ||||||||||||||||| || || |||||||    
T  12658573 tatggatcatctgccaacacataaacgatccaaggtccagcagctccctaaaa 12658521  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 17197721 - 17197765
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    ||||||||||||||||||| |||||| ||||||| |||| |||||    
T  17197721 tatgaatcgtctgccaacatagaaacaatccaagatccatcaact 17197765  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 17773648 - 17773692
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    |||||||| |||||||||||||||| ||| |||| ||||||||||    
T  17773648 tatgaatcatctgccaacacagaaatgattcaagttccaacaact 17773692  T

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Target: scaffold0527 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 3095 - 3134
Alignment:
Q  166 atcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  3095 atcgtctgccaacacagaaacgacccaagttccaacaact 3134  T

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Target: scaffold0527; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 11158 - 11197
Alignment:
Q  166 atcgtctgccaacacagaaacgatccaaggtccaacaact 205  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  11158 atcgtctgccaacacagaaacgacccaagttccaacaact 11197  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 9513252 - 9513164
Alignment:
Q  161 tatgaatcgtctgccaacacagaaacgatccaaggtccaacaacttcctaaaaaacttcagcaagcca-aaacgccctttcgggccaaa 248  Q
    |||||||||||||||||||||  ||||||||| | |||| ||||| |||  |||||  |||||||| | || |||||||||| ||||||    
T  9513252 tatgaatcgtctgccaacacatgaacgatccacgatccatcaactccctgcaaaacaacagcaagcaataatcgccctttcgagccaaa 9513164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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