View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_low_125 (Length: 249)

Name: NF1243_low_125
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_low_125
NF1243_low_125
[»] chr7 (11 HSPs)
chr7 (11-249)||(30644231-30644464)
chr7 (11-45)||(22965957-22965991)
chr7 (12-45)||(2366420-2366453)
chr7 (95-124)||(32888978-32889007)
chr7 (13-45)||(8214174-8214206)
chr7 (13-45)||(8724444-8724476)
chr7 (13-45)||(14102525-14102557)
chr7 (13-45)||(14412542-14412574)
chr7 (13-45)||(21285352-21285384)
chr7 (13-45)||(29658271-29658303)
chr7 (13-45)||(34948170-34948202)
[»] chr4 (17 HSPs)
chr4 (13-59)||(35747468-35747513)
chr4 (11-45)||(548886-548920)
chr4 (11-45)||(3442905-3442939)
chr4 (11-45)||(34684630-34684664)
chr4 (11-45)||(38433373-38433407)
chr4 (13-45)||(3465647-3465679)
chr4 (13-45)||(6330935-6330967)
chr4 (13-45)||(12820404-12820436)
chr4 (13-45)||(12856248-12856280)
chr4 (13-45)||(28221306-28221338)
chr4 (13-45)||(30152178-30152210)
chr4 (13-45)||(32885752-32885784)
chr4 (13-45)||(37032178-37032210)
chr4 (13-45)||(39992899-39992931)
chr4 (13-45)||(44074917-44074949)
chr4 (13-45)||(47017945-47017977)
chr4 (13-45)||(48512263-48512295)
[»] scaffold1990 (1 HSPs)
scaffold1990 (11-45)||(956-990)
[»] scaffold0092 (1 HSPs)
scaffold0092 (11-45)||(47316-47350)
[»] chr8 (9 HSPs)
chr8 (11-45)||(43874976-43875010)
chr8 (13-45)||(3379647-3379679)
chr8 (13-45)||(5184886-5184918)
chr8 (13-45)||(15042364-15042396)
chr8 (11-67)||(27558853-27558904)
chr8 (13-45)||(33570428-33570460)
chr8 (13-45)||(34073238-34073270)
chr8 (13-45)||(36359717-36359749)
chr8 (13-45)||(43468704-43468736)
[»] chr6 (10 HSPs)
chr6 (11-45)||(5134433-5134467)
chr6 (13-67)||(19165414-19165463)
chr6 (13-45)||(6530203-6530235)
chr6 (13-45)||(7563575-7563607)
chr6 (13-45)||(12089161-12089193)
chr6 (13-45)||(16251522-16251554)
chr6 (13-45)||(18904682-18904714)
chr6 (13-45)||(22389749-22389781)
chr6 (13-45)||(25020527-25020559)
chr6 (13-45)||(30566122-30566154)
[»] chr5 (12 HSPs)
chr5 (11-45)||(1244726-1244760)
chr5 (11-45)||(4216814-4216848)
chr5 (11-45)||(33729840-33729874)
chr5 (13-45)||(8015899-8015931)
chr5 (13-45)||(10508644-10508676)
chr5 (13-45)||(18478067-18478099)
chr5 (13-45)||(19059003-19059035)
chr5 (13-45)||(20762345-20762377)
chr5 (13-45)||(20945890-20945922)
chr5 (13-45)||(29096307-29096339)
chr5 (13-45)||(30403814-30403846)
chr5 (13-45)||(38618680-38618712)
[»] chr3 (15 HSPs)
chr3 (11-45)||(16006505-16006539)
chr3 (11-45)||(37279689-37279723)
chr3 (11-45)||(43566795-43566829)
chr3 (11-45)||(43774247-43774281)
chr3 (13-45)||(335029-335061)
chr3 (13-45)||(2732727-2732759)
chr3 (13-45)||(4072732-4072764)
chr3 (13-45)||(14417932-14417964)
chr3 (13-45)||(20623776-20623808)
chr3 (13-45)||(24537891-24537923)
chr3 (13-45)||(33206821-33206853)
chr3 (13-45)||(34344777-34344809)
chr3 (13-45)||(35477795-35477827)
chr3 (13-45)||(45713544-45713576)
chr3 (13-45)||(46328923-46328955)
[»] chr2 (6 HSPs)
chr2 (11-45)||(3179386-3179420)
chr2 (11-45)||(30474194-30474228)
chr2 (13-45)||(3037621-3037653)
chr2 (13-45)||(8234791-8234823)
chr2 (13-45)||(11133140-11133172)
chr2 (13-45)||(34018069-34018101)
[»] chr1 (15 HSPs)
chr1 (7-45)||(4616931-4616969)
chr1 (11-45)||(21884637-21884671)
chr1 (11-45)||(32711143-32711177)
chr1 (7-45)||(37490948-37490986)
chr1 (13-45)||(3532973-3533005)
chr1 (13-45)||(6014517-6014549)
chr1 (13-45)||(11405520-11405552)
chr1 (13-45)||(15774311-15774343)
chr1 (13-45)||(19793590-19793622)
chr1 (13-45)||(34560337-34560369)
chr1 (13-45)||(35593827-35593859)
chr1 (13-45)||(37733819-37733851)
chr1 (13-45)||(39433422-39433454)
chr1 (13-45)||(39434682-39434714)
chr1 (13-45)||(42832011-42832043)
[»] scaffold1086 (1 HSPs)
scaffold1086 (13-45)||(2552-2584)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 30644231 - 30644464
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaattgaattctagccactagtctaccggaccnnnnnnnnnnnnnnngaaatgtcgcaatagccactatt 110  Q
    |||||||||| ||||||||||||||||||||||||     ||||||||||||||||||||||               |||||||||||||||||||||||    
T  30644231 cagacaccccacttattcaccttataaggtgaatt-----ctagccactagtctaccggaccaaaaaaagaaaaaaagaaatgtcgcaatagccactatt 30644325  T
Q  111 tgacaatactttgtttaaaagcataacccagaacaattgtgatttgttcgtatgcatgttgttaaatgcagctatagagctatggcatagcagaatttaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30644326 tgacaatactttgtttaaaagcataacccagaacaattgtgatttgttcgtatgcatgttgttaaatgcagctatagagctatggcatagcagaatttaa 30644425  T
Q  211 acaaaaccgatattgttctgagatacgctaattagtact 249  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  30644426 acaaaaccgatattgttctgcgatacgctaattggtact 30644464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 22965991 - 22965957
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  22965991 cagacaccccacttattcaccttataaggtgaatt 22965957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 2366420 - 2366453
Alignment:
Q  12 agacaccccgcttattcaccttataaggtgaatt 45  Q
    ||||||||| ||||||||||||||||||||||||    
T  2366420 agacaccccacttattcaccttataaggtgaatt 2366453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 124
Target Start/End: Complemental strand, 32889007 - 32888978
Alignment:
Q  95 cgcaatagccactatttgacaatactttgt 124  Q
    ||||||||||||||||||||||||||||||    
T  32889007 cgcaatagccactatttgacaatactttgt 32888978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 8214174 - 8214206
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  8214174 gacaccccacttattcaccttataaggtgaatt 8214206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 8724444 - 8724476
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  8724444 gacaccccacttattcaccttataaggtgaatt 8724476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 14102525 - 14102557
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  14102525 gacaccccacttattcaccttataaggtgaatt 14102557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 14412542 - 14412574
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  14412542 gacaccccacttattcaccttataaggtgaatt 14412574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 21285384 - 21285352
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  21285384 gacaccccacttattcaccttataaggtgaatt 21285352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 29658303 - 29658271
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  29658303 gacaccccacttattcaccttataaggtgaatt 29658271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 34948170 - 34948202
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  34948170 gacaccccacttattcaccttataaggtgaatt 34948202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 35747513 - 35747468
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaattgaattctagccact 59  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||    
T  35747513 gacaccccacttattcaccttataaggtgaa-tgaattctagccact 35747468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 548920 - 548886
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  548920 cagacaccccacttattcaccttataaggtgaatt 548886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 3442905 - 3442939
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  3442905 cagacaccccacttattcaccttataaggtgaatt 3442939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 34684630 - 34684664
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  34684630 cagacaccccacttattcaccttataaggtgaatt 34684664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 38433373 - 38433407
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  38433373 cagacaccccacttattcaccttataaggtgaatt 38433407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 3465647 - 3465679
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  3465647 gacaccccacttattcaccttataaggtgaatt 3465679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 6330967 - 6330935
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  6330967 gacaccccacttattcaccttataaggtgaatt 6330935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 12820436 - 12820404
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  12820436 gacaccccacttattcaccttataaggtgaatt 12820404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 12856248 - 12856280
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  12856248 gacaccccacttattcaccttataaggtgaatt 12856280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 28221338 - 28221306
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  28221338 gacaccccacttattcaccttataaggtgaatt 28221306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 30152178 - 30152210
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  30152178 gacaccccacttattcaccttataaggtgaatt 30152210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 32885752 - 32885784
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  32885752 gacaccccacttattcaccttataaggtgaatt 32885784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 37032210 - 37032178
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  37032210 gacaccccacttattcaccttataaggtgaatt 37032178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 39992899 - 39992931
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  39992899 gacaccccacttattcaccttataaggtgaatt 39992931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 44074917 - 44074949
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  44074917 gacaccccacttattcaccttataaggtgaatt 44074949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 47017977 - 47017945
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  47017977 gacaccccacttattcaccttataaggtgaatt 47017945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 48512263 - 48512295
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  48512263 gacaccccacttattcaccttataaggtgaatt 48512295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1990 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1990
Description:

Target: scaffold1990; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 956 - 990
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  956 cagacaccccacttattcaccttataaggtgaatt 990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 47350 - 47316
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  47350 cagacaccccacttattcaccttataaggtgaatt 47316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 43875010 - 43874976
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  43875010 cagacaccccacttattcaccttataaggtgaatt 43874976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 3379679 - 3379647
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  3379679 gacaccccacttattcaccttataaggtgaatt 3379647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 5184918 - 5184886
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  5184918 gacaccccacttattcaccttataaggtgaatt 5184886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 15042396 - 15042364
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  15042396 gacaccccacttattcaccttataaggtgaatt 15042364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 27558904 - 27558853
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaattgaattctagccactagtctacc 67  Q
    |||||||||| |||||||||||||| |||     |||||||||||||||||||||||    
T  27558904 cagacaccccacttattcaccttattagg-----tgaattctagccactagtctacc 27558853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 33570460 - 33570428
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  33570460 gacaccccacttattcaccttataaggtgaatt 33570428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 34073270 - 34073238
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  34073270 gacaccccacttattcaccttataaggtgaatt 34073238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 36359749 - 36359717
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  36359749 gacaccccacttattcaccttataaggtgaatt 36359717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 43468736 - 43468704
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  43468736 gacaccccacttattcaccttataaggtgaatt 43468704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 5134467 - 5134433
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  5134467 cagacaccccacttattcaccttataaggtgaatt 5134433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 19165414 - 19165463
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaattgaattctagccactagtctacc 67  Q
    |||||||| ||||||||||||||||||     |||||||||||||||||||||||    
T  19165414 gacaccccacttattcaccttataagg-----tgaattctagccactagtctacc 19165463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 6530235 - 6530203
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  6530235 gacaccccacttattcaccttataaggtgaatt 6530203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 7563607 - 7563575
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  7563607 gacaccccacttattcaccttataaggtgaatt 7563575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 12089161 - 12089193
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  12089161 gacaccccacttattcaccttataaggtgaatt 12089193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 16251554 - 16251522
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  16251554 gacaccccacttattcaccttataaggtgaatt 16251522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 18904714 - 18904682
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  18904714 gacaccccacttattcaccttataaggtgaatt 18904682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 22389781 - 22389749
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  22389781 gacaccccacttattcaccttataaggtgaatt 22389749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 25020559 - 25020527
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  25020559 gacaccccacttattcaccttataaggtgaatt 25020527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 30566122 - 30566154
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  30566122 gacaccccacttattcaccttataaggtgaatt 30566154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 1244760 - 1244726
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  1244760 cagacaccccacttattcaccttataaggtgaatt 1244726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 4216848 - 4216814
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  4216848 cagacaccccacttattcaccttataaggtgaatt 4216814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 33729840 - 33729874
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  33729840 cagacaccccacttattcaccttataaggtgaatt 33729874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 8015899 - 8015931
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  8015899 gacaccccacttattcaccttataaggtgaatt 8015931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 10508644 - 10508676
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  10508644 gacaccccacttattcaccttataaggtgaatt 10508676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 18478067 - 18478099
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  18478067 gacaccccacttattcaccttataaggtgaatt 18478099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 19059035 - 19059003
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  19059035 gacaccccacttattcaccttataaggtgaatt 19059003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 20762345 - 20762377
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  20762345 gacaccccacttattcaccttataaggtgaatt 20762377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 20945922 - 20945890
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  20945922 gacaccccacttattcaccttataaggtgaatt 20945890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 29096339 - 29096307
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  29096339 gacaccccacttattcaccttataaggtgaatt 29096307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 30403814 - 30403846
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  30403814 gacaccccacttattcaccttataaggtgaatt 30403846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 38618712 - 38618680
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  38618712 gacaccccacttattcaccttataaggtgaatt 38618680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 16006539 - 16006505
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  16006539 cagacaccccacttattcaccttataaggtgaatt 16006505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 37279689 - 37279723
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  37279689 cagacaccccacttattcaccttataaggtgaatt 37279723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 43566829 - 43566795
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  43566829 cagacaccccacttattcaccttataaggtgaatt 43566795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 43774247 - 43774281
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  43774247 cagacaccccacttattcaccttataaggtgaatt 43774281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 335061 - 335029
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  335061 gacaccccacttattcaccttataaggtgaatt 335029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 2732727 - 2732759
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  2732727 gacaccccacttattcaccttataaggtgaatt 2732759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 4072764 - 4072732
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  4072764 gacacccctcttattcaccttataaggtgaatt 4072732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 14417932 - 14417964
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  14417932 gacaccccacttattcaccttataaggtgaatt 14417964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 20623808 - 20623776
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  20623808 gacaccccacttattcaccttataaggtgaatt 20623776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 24537891 - 24537923
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  24537891 gacaccccacttattcaccttataaggtgaatt 24537923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 33206821 - 33206853
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  33206821 gacaccccacttattcaccttataaggtgaatt 33206853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 34344809 - 34344777
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  34344809 gacaccccacttattcaccttataaggtgaatt 34344777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 35477795 - 35477827
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  35477795 gacaccccacttattcaccttataaggtgaatt 35477827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 45713544 - 45713576
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  45713544 gacaccccacttattcaccttataaggtgaatt 45713576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 46328955 - 46328923
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  46328955 gacaccccacttattcaccttataaggtgaatt 46328923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 3179386 - 3179420
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  3179386 cagacaccccacttattcaccttataaggtgaatt 3179420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 30474228 - 30474194
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  30474228 cagacaccccacttattcaccttataaggtgaatt 30474194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 3037653 - 3037621
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  3037653 gacaccccacttattcaccttataaggtgaatt 3037621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 8234823 - 8234791
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  8234823 gacaccccacttattcaccttataaggtgaatt 8234791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 11133140 - 11133172
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  11133140 gacaccccacttattcaccttataaggtgaatt 11133172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 34018101 - 34018069
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  34018101 gacaccccacttattcaccttataaggtgaatt 34018069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 4616931 - 4616969
Alignment:
Q  7 accacagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  4616931 accacagacaccccacttattcaccttataaagtgaatt 4616969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 21884637 - 21884671
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  21884637 cagacaccccacttattcaccttataaggtgaatt 21884671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 32711177 - 32711143
Alignment:
Q  11 cagacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  32711177 cagacaccccacttattcaccttataaggtgaatt 32711143  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 37490948 - 37490986
Alignment:
Q  7 accacagacaccccgcttattcaccttataaggtgaatt 45  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  37490948 accacggacaccccgcttattcatcttataaggtgaatt 37490986  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 3533005 - 3532973
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  3533005 gacaccccacttattcaccttataaggtgaatt 3532973  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 6014549 - 6014517
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  6014549 gacaccccacttattcaccttataaggtgaatt 6014517  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 11405520 - 11405552
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  11405520 gacaccccacttattcaccttataaggtgaatt 11405552  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 15774343 - 15774311
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  15774343 gacaccccacttattcaccttataaggtgaatt 15774311  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 19793590 - 19793622
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  19793590 gacaccccacttattcaccttataaggtgaatt 19793622  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 34560369 - 34560337
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  34560369 gacaccccacttattcaccttataaggtgaatt 34560337  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 35593827 - 35593859
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  35593827 gacaccccacttattcaccttataaggtgaatt 35593859  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 37733819 - 37733851
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  37733819 gacaccccacttattcaccttataaggtgaatt 37733851  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 39433422 - 39433454
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  39433422 gacaccccacttattcaccttataaggtgaatt 39433454  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 39434682 - 39434714
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  39434682 gacaccccacttattcaccttataaggtgaatt 39434714  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 42832011 - 42832043
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  42832011 gacaccccacttattcaccttataaggtgaatt 42832043  T

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Target: scaffold1086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1086
Description:

Target: scaffold1086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 2552 - 2584
Alignment:
Q  13 gacaccccgcttattcaccttataaggtgaatt 45  Q
    |||||||| ||||||||||||||||||||||||    
T  2552 gacaccccacttattcaccttataaggtgaatt 2584  T

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