View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_low_129 (Length: 234)

Name: NF1243_low_129
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_low_129
NF1243_low_129
[»] chr2 (3 HSPs)
chr2 (82-205)||(40059768-40059891)
chr2 (82-195)||(40077846-40077961)
chr2 (96-194)||(40085667-40085765)
[»] chr7 (1 HSPs)
chr7 (96-203)||(35052652-35052758)
[»] chr5 (2 HSPs)
chr5 (96-194)||(12735460-12735558)
chr5 (96-194)||(12798287-12798385)
[»] chr3 (1 HSPs)
chr3 (82-203)||(53322740-53322862)
[»] chr4 (1 HSPs)
chr4 (120-197)||(22015667-22015744)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 40059768 - 40059891
Alignment:
Q  82 ttctggggtgttcatctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatga 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40059768 ttctggggtgttcatctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattccggggattaagttccgaactgataatga 40059867  T
Q  182 accatttaaggtagaggtaaccat 205  Q
    ||||||||||||||||||||||||    
T  40059868 accatttaaggtagaggtaaccat 40059891  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 40077846 - 40077961
Alignment:
Q  82 ttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataat 179  Q
    ||||| |||||||||  ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  40077846 ttctgtggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaat 40077945  T
Q  180 gaaccatttaaggtag 195  Q
    ||||||||||||||||    
T  40077946 gaaccatttaaggtag 40077961  T

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Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 40085667 - 40085765
Alignment:
Q  96 tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggta 194  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  40085667 tctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggta 40085765  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 35052758 - 35052652
Alignment:
Q  96 tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag 195  Q
    |||||| |||||||||||||||||||||||||||  ||||||||| ||||||||||||| ||||||| ||||| ||| || ||||||||||||||||||     
T  35052758 tctaattgagggctttaacttcttaacagtggttaacctctttggattcacttcattccagggattaggttccaaacagacaatgaaccatttaaggta- 35052660  T
Q  196 aggtaacc 203  Q
    ||||||||    
T  35052659 aggtaacc 35052652  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 12735558 - 12735460
Alignment:
Q  96 tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggta 194  Q
    |||||| ||||||||||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||| ||  || ||||||||||||||||||    
T  12735558 tctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatagacaatgaaccatttaaggta 12735460  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 12798385 - 12798287
Alignment:
Q  96 tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggta 194  Q
    |||||| ||||||||||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||| ||  || ||||||||||||||||||    
T  12798385 tctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatagacaatgaaccatttaaggta 12798287  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 53322740 - 53322862
Alignment:
Q  82 ttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataat 179  Q
    ||||||||| |||||  ||||| ||||||||||||||||||| | |||||  ||||||||  ||||||||||||| ||||||||||||| ||  || |||    
T  53322740 ttctggggtcttcatttctaattgagggctttaacttcttaagattggttaacctctttgtattcacttcattccagggattaagttccaaatcgacaat 53322839  T
Q  180 gaaccatttaaggtagaggtaacc 203  Q
    ||||||||||||||| ||||||||    
T  53322840 gaaccatttaaggta-aggtaacc 53322862  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 22015744 - 22015667
Alignment:
Q  120 aacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagag 197  Q
    |||||||||||||| |||||| | || || ||| | || ||||||||||||||| ||||||||||||| |||| ||||    
T  22015744 aacagtggtttccccctttggttgcattttattgctggaattaagttccgaactaataatgaaccattcaaggcagag 22015667  T

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