View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_13 (Length: 493)
Name: NF1243_low_13
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 44551407 - 44550944
Alignment:
| Q |
1 |
aaaaatgcaaattataatcttcatttccacgtgttaatttaatatccccatccaatgtccaaactcatattaaatggaatcatatgcaggtcatacaatt |
100 |
Q |
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| T |
44551407 |
aaaaatgcaaattataatcttcatttccacgtgttaatttaatatccccatccaaggtccaaactcatattaaatggaatcatatgcaggtcatacaatt |
44551308 |
T |
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| Q |
101 |
ttcttttgaactttctagacgcatataatgattgggggtatccaattctcctctcatatattctttagttctatttgnnnnnnnnatgttgaaatttctt |
200 |
Q |
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| T |
44551307 |
ttcttttgaactttctagacgcatataatgattgggggtatccaattctcctctcatatattctttagttctatttgttttttttatgttgaaatttctt |
44551208 |
T |
|
| Q |
201 |
gacttgtatgttggatttgtgctaaaagaatgtatatttagcacaaaatcatttcacttcctaactgtaaattatttacgacaatatagaatagcactat |
300 |
Q |
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| T |
44551207 |
gacttgtatgttggatttgtgctaaaagaatgtatatttagcacaaaatcatttcacttcttaactgtaaattatttacgactatatagaatagcattat |
44551108 |
T |
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| Q |
301 |
aagttttcttatactggtatataagcataatgcttgttgcctccaattctccccatatacctctatatggcttaattaattaatctcaagaaatgattgg |
400 |
Q |
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| T |
44551107 |
aagttttcttatactggtatataagcataatgcttgttgcctccaattctccccatatacctctatatggcttaattaattaatctcaagaaatgattgg |
44551008 |
T |
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| Q |
401 |
tgggtaatgtgtgtaattgttgtaaactttagaatgcaaaaatcaaattcttaatcataaaaaa |
464 |
Q |
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| T |
44551007 |
tgggtaatgtgtgtaattgttgtaaactttagaatacaaaaatcaaattcttaatcataaaaaa |
44550944 |
T |
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