View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_15 (Length: 463)
Name: NF1243_low_15
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 2 - 336
Target Start/End: Original strand, 8653276 - 8653606
Alignment:
| Q |
2 |
atttaaaaaatcagtagctaaacctatcactagagtcagacactgaaatatttcgatcactaaatttttagttagtgtgtaattaataacatgtgcatgc |
101 |
Q |
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| T |
8653276 |
atttaaaaaatcagtagctaaacctatcactagagtcagacactgaaatatttcgatcactaaatttttagttagtgtgtaat----aacatgtgcatgc |
8653371 |
T |
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| Q |
102 |
aagtaattagtgtttggagagacttgccttggagagatggcaacagctgcaatggcagaagaagcacaagcagaagccatgatactgttcttgccctcaa |
201 |
Q |
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| T |
8653372 |
aagtaattagtgtttgtagagacttgccttggagagatggcaacagctgcaatggcagaagaagcacaagcagaagccatgatactgttcttgccctcaa |
8653471 |
T |
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| Q |
202 |
gggataaaagtgagtaagttttgtgagttttggttatgagaatgattggttggtgaatatgaaagaaaatatgctaattttgttaatgtatgcaatgttt |
301 |
Q |
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| T |
8653472 |
gggataaaagtgagtaagttttgtgagttttggttatgagaatgattggttggtgaatatgaaagaaaatatgctaattttgttaatgtatgcaatgttt |
8653571 |
T |
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| Q |
302 |
cttatccttaaggataggagtgtgaatttgatact |
336 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
8653572 |
cttatccttaaggataggtgtgtgaatttgatact |
8653606 |
T |
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