View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_16 (Length: 456)
Name: NF1243_low_16
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 49 - 428
Target Start/End: Original strand, 42968639 - 42969015
Alignment:
| Q |
49 |
gttatactttggccaataaatattcagcctaataagtttattttcttaattaatattaaaaattgacaatgaagctcaacttagttggtaagacgcttca |
148 |
Q |
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| T |
42968639 |
gttatactttggccaataaatattcagcctaataagtttattttcttaattaatattaaaaattgacaatgaagctcaacttagttggtaagacgcttca |
42968738 |
T |
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| Q |
149 |
cctacaccnnnnnnnggtctgggttcgtgtcatgagacggagaaatggagaacactattgattgatcccctttacaaaaaagatgttttttcaatgacat |
248 |
Q |
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| T |
42968739 |
cctacaccaaaaaaaggtctgggttcatgtcatgagacggagaaatggagaacactattgattgatcccctttacaaaaaggatgttttttcaatgacat |
42968838 |
T |
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| Q |
249 |
taagctacttggggtttttaaatatgtattaaaatccttnnnnnnnnnnnnggtatttnnnnnnnttgcaactttgtccataagcttatcaataattatg |
348 |
Q |
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| T |
42968839 |
taaactacttggggtttttaaatatgtattaaaatcc---caaaaaaaaaaggtatttaaaaaaattgcaactttgtccataagcttatcaataattatg |
42968935 |
T |
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| Q |
349 |
taattaagcatgtgaactgcaaaaatttgtaactctaacaaatataaaaacctgagtaaatctaatttataggcatgcat |
428 |
Q |
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| T |
42968936 |
taattaagcatgtgaactacaaaaatttgtaactctaacaaatataaaaacctgagtaaatctaatttataggcatgcat |
42969015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 36815843 - 36815804
Alignment:
| Q |
111 |
ttgacaatgaagctcaacttagttggtaagacgcttcacc |
150 |
Q |
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| T |
36815843 |
ttgacaatgaagtgcaacttagttggtaagacgcttcacc |
36815804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 156
Target Start/End: Original strand, 12260602 - 12260630
Alignment:
| Q |
128 |
cttagttggtaagacgcttcacctacacc |
156 |
Q |
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| T |
12260602 |
cttagttggtaagacgcttcacctacacc |
12260630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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