View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_19 (Length: 449)
Name: NF1243_low_19
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 35016227 - 35015921
Alignment:
| Q |
8 |
caccacagagctaaccataatagcaattagcataaacacatgaaactcattgtgagtagaattagaagccattttggacacnnnnnnnnnnnnnn--gtt |
105 |
Q |
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| T |
35016227 |
caccatagagctaaccattatagcaattagcataaacacatgaaactcattgtgagtagaattagaagccattttggacagagagagagagagagaggtt |
35016128 |
T |
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| Q |
106 |
ttggttgttatgatatgagggaatgtgttagaataaaggatatatatagggagatgagaaagagaggagggaaatcaattaaagttttaaaaaccggacc |
205 |
Q |
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| T |
35016127 |
ttagttgttatgatatgagggaatgtgttagaataaaggatatatatagggagatgagaaagagaggagggaaattaattaaagttttaaaaaccggacc |
35016028 |
T |
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| Q |
206 |
gaactttcggttcaacggggtgagctagaaaaccgataagtttctcaattggtttgatcccaattatatcgtacgttggttgaaccagatttaattgaga |
305 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
35016027 |
gaacgttcggttcaacggggtgagctagaaaaccgataagtttttcaattggtttgatcccaattataccgtacattggttgaaccagatttaattgaga |
35015928 |
T |
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| Q |
306 |
tcggttc |
312 |
Q |
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| T |
35015927 |
tcggttc |
35015921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 35015894 - 35015811
Alignment:
| Q |
339 |
agcctgtgttcggtactatggtgagtgtcttagaattacagtgatccatcgtgattgtctaaaagctacactttgtagtttctg |
422 |
Q |
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| T |
35015894 |
agcctgtgttcggtactatggtgagtgtcttagaattacagtgatctatcgtgattgtctaaaagctacactttgtagtttctg |
35015811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 43049423 - 43049468
Alignment:
| Q |
377 |
cagtgatccatcgtgattgtctaaaagctacactttgtagtttctg |
422 |
Q |
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| T |
43049423 |
cagtgatccatcgtgattttttaaaagctacactttgtagcttctg |
43049468 |
T |
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