View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_low_2 (Length: 730)

Name: NF1243_low_2
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_low_2
NF1243_low_2
[»] chr5 (1 HSPs)
chr5 (77-721)||(10913686-10914329)


Alignment Details
Target: chr5 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 77 - 721
Target Start/End: Original strand, 10913686 - 10914329
Alignment:
Q  77 cacagacgcctgcaaatcaaaggcgtgaaatgccttttactgataggaactaaagattctgaacttccaatcatgtatannnnnnnnnnaattctgaatt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||| ||||    
T  10913686 cacagacgcctgcaaatcaaaggcgtgaaatgccttttactgataggaactaaagattctgaacttccaatcatgtatattttttttt-aattctaaatt 10913784  T
Q  177 gattggacaaagttccttagccttgagtcttatcaaatttatagagaatggcatgaatgtaaaataaataaaaaagtttcatcccaccatgcaatacata 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||    
T  10913785 gattggacaaagttccttagccttgagtcttatcaaatttatagagaatggcatgaatgtaaaataaataaaaaggtttcaaccccccatgcaatacata 10913884  T
Q  277 aaaagtgcagaggtaatatgtaaggtatgtaaagagaatcatacagaaacaatgtgttttacaaccaatatatccctggttgatgcccaagacgtgtatc 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10913885 aaaagtgcagaggtaatatgtaaggtatgtaaagagaatcatacagaaacaatgtgttttacaaccaatatatccctggttgatgcccaagacgtgtatc 10913984  T
Q  377 cctaaataatcaatacaaaaagcttttcctgtatcaactttcaaaagaaaatattcatgtactcctatagtattcaaatcctttcctatctcctttcttc 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10913985 cctaaataatcaatacaaaaagcttttcctgtatcaactttcaaaagaaaatattcatgtactcctatagtattcaaatcctttcctatctcctttcttc 10914084  T
Q  477 attcaccaaatactcctttccaaaattctctgtaatcaaaagctactataaaatttagttcattctctttgtcaaacttaaaatcatatatttaaattga 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10914085 attcaccaaatactcctttccaaaattctctgtaatcaaaagctactataaaatttagttcattctctttgtcaaacttaaaatcatatatttaaattga 10914184  T
Q  577 aacaacaaataaatcagctgtgaagaacccaagccatttgactcatttagttagattcatgaatgagtttgtttaaaagggtcgtcaacaaagcgtccct 676  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10914185 aacaacaaataaatcagctgtgaagaacccaagccatttgactcatttagttagattcatgaatgagtttgtttaaaagggtcgtcaacaaagcgtccct 10914284  T
Q  677 tctctctgccctattctcttccctcagtctcctatgctcatctct 721  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  10914285 tctctctgccctattctcttccctcagtctcctatgctcttctct 10914329  T

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