View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_low_21 (Length: 434)

Name: NF1243_low_21
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_low_21
NF1243_low_21
[»] scaffold0001 (2 HSPs)
scaffold0001 (162-384)||(186230-186452)
scaffold0001 (3-118)||(186494-186609)
[»] scaffold0158 (5 HSPs)
scaffold0158 (162-380)||(36357-36575)
scaffold0158 (162-297)||(28635-28769)
scaffold0158 (293-384)||(31020-31111)
scaffold0158 (30-118)||(36218-36306)
scaffold0158 (30-118)||(28496-28584)
[»] scaffold0035 (5 HSPs)
scaffold0035 (162-380)||(97515-97737)
scaffold0035 (14-118)||(87676-87780)
scaffold0035 (14-118)||(97369-97473)
scaffold0035 (162-258)||(87822-87920)
scaffold0035 (311-379)||(87950-88018)
[»] chr1 (4 HSPs)
chr1 (188-384)||(18477697-18477897)
chr1 (188-384)||(18487793-18487993)
chr1 (4-118)||(18487611-18487726)
chr1 (4-118)||(18477515-18477630)
[»] chr4 (2 HSPs)
chr4 (282-367)||(14223561-14223646)
chr4 (282-367)||(14233656-14233741)
[»] chr2 (1 HSPs)
chr2 (282-367)||(28386117-28386202)
[»] scaffold0564 (1 HSPs)
scaffold0564 (282-367)||(535-620)
[»] scaffold1407 (1 HSPs)
scaffold1407 (314-367)||(1408-1461)
[»] scaffold0177 (1 HSPs)
scaffold0177 (314-363)||(32388-32437)


Alignment Details
Target: scaffold0001 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 162 - 384
Target Start/End: Complemental strand, 186452 - 186230
Alignment:
162 aaaatagtacgattgtatcaaactgtgaatgaaaaggaaacggaaacttaggattacaatcaactatgaatttctaatgcttacctaacaacttctctcg 261  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||  |||| | ||||||||     
186452 aaaacagtacgattgtatcaaactgtgaatgaaaaggaaactgaaacttaggattacaatcggctatgaatttctaatgcttgtctaaaagcttctctcc 186353  T
262 tatgctcttcctctctggacctatttataggccaagcttccttaaaaacgtgttctggtcgtgcttctgcaggtggagaaagtgggagagaaaactggaa 361  Q
    |  ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||||||||| ||  ||||||||||||||||||||    
186352 tcagctcttcctctctggacctatttataggccaagcttctttaacaacgtgttctgatcgtgcctctgcaggtgcagggagtgggagagaaaactggaa 186253  T
362 accgttcctggaagtgggggaga 384  Q
    |||||||||||||||||||||||    
186252 accgttcctggaagtgggggaga 186230  T

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Target: scaffold0001; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 186609 - 186494
Alignment:
3 agcagcaccacagaatgaaaataagctaatttaacaaacacccattccaaaccgcagcaacagagaaattaataacccggcaacagcttaattcggaatt 102  Q
    ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||   ||| ||||||| |||||||||    
186609 agcagcaacagagaatgaaaataagctaatttaacgaacacccattccaaaccgcagcaacagagaaataaataacatagcagcagcttatttcggaatt 186510  T
103 agaacagcgatgactg 118  Q
    ||||||||||||||||    
186509 agaacagcgatgactg 186494  T

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Target: scaffold0158 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 162 - 380
Target Start/End: Original strand, 36357 - 36575
Alignment:
162 aaaatagtacgattgtatcaaactgtgaatgaaaaggaaacggaaacttaggattacaatcaactatgaatttctaatgcttacctaacaacttctctcg 261  Q
    |||| ||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||| ||||| ||||||||||     
36357 aaaacagtacgattgtatcgtactgtgaatgaaaaggaaactgaaacttaggattacaatcagttatgaatttctaatgcttgcctaaaaacttctctcc 36456  T
262 tatgctcttcctctctggacctatttataggccaagcttccttaaaaacgtgttctggtcgtgcttctgcaggtggagaaagtgggagagaaaactggaa 361  Q
       ||||||||||||||||||||||||||||||||||||| || | ||||| || || |||||| |||||||||||||  ||||||||||||||||||||    
36457 gcagctcttcctctctggacctatttataggccaagcttcttttacaacgtattatgatcgtgcctctgcaggtggagggagtgggagagaaaactggaa 36556  T
362 accgttcctggaagtgggg 380  Q
    |||||||||||||||||||    
36557 accgttcctggaagtgggg 36575  T

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Target: scaffold0158; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 162 - 297
Target Start/End: Original strand, 28635 - 28769
Alignment:
162 aaaatagtacgattgtatcaaactgtgaatgaaaaggaaacggaaacttaggattacaatcaactatgaatttctaatgcttacctaacaacttctctcg 261  Q
    |||| ||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||  |||| |||||||| |||| ||||| ||||||||||     
28635 aaaacagtacgattgtat-aaactgtaaatgaaaaggaaactgaaacttaggattacaatcagttatgcatttctaaagcttgcctaaaaacttctctcc 28733  T
262 tatgctcttcctctctggacctatttataggccaag 297  Q
       |||||||||||||||||||||||||||||||||    
28734 gcagctcttcctctctggacctatttataggccaag 28769  T

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Target: scaffold0158; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 31020 - 31111
Alignment:
293 ccaagcttccttaaaaacgtgttctggtcgtgcttctgcaggtggagaaagtgggagagaaaactggaaaccgttcctggaagtgggggaga 384  Q
    ||||||||| |||| || |||||||| |||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
31020 ccaagcttctttaacaatgtgttctgatcgtgcctctgcaggtggagggagtgggagagaaaactggaaaccgttcctggaagtgggggaga 31111  T

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Target: scaffold0158; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 36218 - 36306
Alignment:
30 aatttaacaaacacccattccaaaccgcagcaacagagaaattaataacccggcaacagcttaattcggaattagaacagcgatgactg 118  Q
    |||||||| |||||| |||||||||||||||||||  ||||| |||||| ||||| ||||||| || |||||||||||| | |||||||    
36218 aatttaacgaacaccaattccaaaccgcagcaacaaggaaataaataacacggcagcagcttattttggaattagaacaacaatgactg 36306  T

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Target: scaffold0158; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 28496 - 28584
Alignment:
30 aatttaacaaacacccattccaaaccgcagcaacagagaaattaataacccggcaacagcttaattcggaattagaacagcgatgactg 118  Q
    |||||||| |||||| |||||||||||||||||||  ||||| |||||| ||||| || |||| || |||||||||||| | |||||||    
28496 aatttaacgaacaccaattccaaaccgcagcaacaaggaaataaataacacggcagcaacttattttggaattagaacaacaatgactg 28584  T

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Target: scaffold0035 (Bit Score: 133; Significance: 5e-69; HSPs: 5)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 162 - 380
Target Start/End: Original strand, 97515 - 97737
Alignment:
162 aaaatagtacgattgtatcaaactgtgaatgaaaaggaaacg--gaaacttaggattacaatcaactatgaatttctaatgcttacctaacaacttctct 259  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||     
97515 aaaatagtacgattgtatcaaactgtgaatgaaaaggaaaacttgaaacttaggattacaatcagctatgaatttctaatgcttgcctaaaaacttctcc 97614  T
260 cg--tatgctcttcctctctggacctatttataggccaagcttccttaaaaacgtgttctggtcgtgcttctgcaggtggagaaagtgggagagaaaact 357  Q
    |   | | || | | | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
97615 cccttttcctttccttttctagacctatttataggccaagctttcttaaaaacgtgttctggtcgtgcttctgcaggtggaggaagtgggagagaaaact 97714  T
358 ggaaaccgttcctggaagtgggg 380  Q
    ||||||||||||||| |||||||    
97715 ggaaaccgttcctgggagtgggg 97737  T

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Target: scaffold0035; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 87676 - 87780
Alignment:
14 agaatgaaaataagctaatttaacaaacacccattccaaaccgcagcaacagagaaattaataacccggcaacagcttaattcggaattagaacagcgat 113  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||    
87676 agaatgaaaataagctaatttaacgaacacccattccaaaccgcagcaacagagaaataaataacacggcagcagcttaattcggaattagaacagcgat 87775  T
114 gactg 118  Q
    |||||    
87776 gactg 87780  T

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Target: scaffold0035; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 97369 - 97473
Alignment:
14 agaatgaaaataagctaatttaacaaacacccattccaaaccgcagcaacagagaaattaataacccggcaacagcttaattcggaattagaacagcgat 113  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||||||||| ||||    
97369 agaatgaaaataagctaatttaacgaacacccattccaaaccgcagcaacagagaaataaataacacgacagcagcttaattcggaattagaacaacgat 97468  T
114 gactg 118  Q
    |||||    
97469 gactg 97473  T

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Target: scaffold0035; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 87822 - 87920
Alignment:
162 aaaatagtacgattgtatcaaactgtgaatgaaaaggaaa--cggaaacttaggattacaatcaactatgaatttctaatgcttacctaacaacttctc 258  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||| |||||||||||||||| || ||||| ||||||||    
87822 aaaatagtacgattgtatcaaactgtgaatgaaaaggaaaacttgaaacttaggattacaatcagctatgaatttctaatgtttgcctaaaaacttctc 87920  T

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Target: scaffold0035; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 379
Target Start/End: Original strand, 87950 - 88018
Alignment:
311 gtgttctggtcgtgcttctgcaggtggagaaagtgggagagaaaactggaaaccgttcctggaagtggg 379  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||    
87950 gtgttctggtcgtgcttctgcaggtggaggaagtgggagagaaaactgaaaaccgttcctgggagtggg 88018  T

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Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 188 - 384
Target Start/End: Original strand, 18477697 - 18477897
Alignment:
188 gaatgaaaaggaaacg-gaaacttaggattacaatcaactatgaatttctaatgcttacctaacaa--cttctctcgtatgctcttcct-ctctggacct 283  Q
    |||||||||||||||  |||||||||||||||||| | ||||||||||||||||||| ||||| ||  |||||||| | |   ||| || ||||| ||||    
18477697 gaatgaaaaggaaacttgaaacttaggattacaataagctatgaatttctaatgcttgcctaaaaaaacttctctcctttttcctttcttctctgcacct 18477796  T
284 atttataggccaagcttccttaaaaacgtgttctggtcgtgcttctgcaggtggagaaagtgggagagaaaactggaaaccgttcctggaagtgggggag 383  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
18477797 atttataggccaagcttcgtaaaaaacgtgttctggtcgtgcttctgcaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggggag 18477896  T
384 a 384  Q
    |    
18477897 a 18477897  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 188 - 384
Target Start/End: Original strand, 18487793 - 18487993
Alignment:
188 gaatgaaaaggaaacg-gaaacttaggattacaatcaactatgaatttctaatgcttacctaacaa--cttctctcgtatgctcttcct-ctctggacct 283  Q
    |||||||||||||||  ||||||||||||||||||   ||||||||||||||||||| ||||| ||  |||||||| | |   ||| || ||||| ||||    
18487793 gaatgaaaaggaaacttgaaacttaggattacaatatgctatgaatttctaatgcttgcctaaaaaaacttctctcctttttcctttcttctctgcacct 18487892  T
284 atttataggccaagcttccttaaaaacgtgttctggtcgtgcttctgcaggtggagaaagtgggagagaaaactggaaaccgttcctggaagtgggggag 383  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
18487893 atttataggccaagcttcctaaaaaatgtgttctggtcatgcttctgcaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggggag 18487992  T
384 a 384  Q
    |    
18487993 a 18487993  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 18487611 - 18487726
Alignment:
4 gcagcaccacagaatgaaaataagctaatttaacaaacacccattcc-aaaccgcagcaacagagaaattaataacccggcaacagcttaattcggaatt 102  Q
    |||||| || |||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||| || ||  | ||  |||||||||| |||||     
18487611 gcagcaacaaagaatgaaaataaggtagtttaacgaacacccattccaaaaccgcagcaacagagaaataaacaatacagccgcagcttaatttggaata 18487710  T
103 agaacagcgatgactg 118  Q
    |||||||| |||||||    
18487711 agaacagcaatgactg 18487726  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 18477515 - 18477630
Alignment:
4 gcagcaccacagaatgaaaataagctaatttaacaaacacccattcc-aaaccgcagcaacagagaaattaataacccggcaacagcttaattcggaatt 102  Q
    |||||| || |||||||||||||  || |||||| |||||||||||| ||||||||||||||||||||| || ||  | |   ||||||||||||||||     
18477515 gcagcaacaaagaatgaaaataacgtagtttaacgaacacccattccaaaaccgcagcaacagagaaataaacaatacagtcgcagcttaattcggaata 18477614  T
103 agaacagcgatgactg 118  Q
    |||||||| |||||||    
18477615 agaacagcaatgactg 18477630  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 14223646 - 14223561
Alignment:
282 ctatttataggccaagcttccttaaaaacgtgttctggtcgtgcttctgcaggtggagaaagtgggagagaaaactggaaaccgtt 367  Q
    |||||||||||||||||||| ||  ||||||| |||| ||||||||||||||||||||  ||||||||||||| ||||||||||||    
14223646 ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatctggaaaccgtt 14223561  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 14233741 - 14233656
Alignment:
282 ctatttataggccaagcttccttaaaaacgtgttctggtcgtgcttctgcaggtggagaaagtgggagagaaaactggaaaccgtt 367  Q
    |||||||||||||||||||| ||  ||||||| |||| ||||||||||||||||||||  ||||||||||||| ||||||||||||    
14233741 ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatctggaaaccgtt 14233656  T

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Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 282 - 367
Target Start/End: Complemental strand, 28386202 - 28386117
Alignment:
282 ctatttataggccaagcttccttaaaaacgtgttctggtcgtgcttctgcaggtggagaaagtgggagagaaaactggaaaccgtt 367  Q
    |||||||||||||||||||| ||  ||||||| |||| ||||||||||||||||||||  ||||||||||||| ||||||||||||    
28386202 ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatctggaaaccgtt 28386117  T

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Target: scaffold0564 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 367
Target Start/End: Original strand, 535 - 620
Alignment:
282 ctatttataggccaagcttccttaaaaacgtgttctggtcgtgcttctgcaggtggagaaagtgggagagaaaactggaaaccgtt 367  Q
    |||||||||||||||||||| ||  ||||||| |||| ||||||||||||||||||||  |||||||||||||  |||||||||||    
535 ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatatggaaaccgtt 620  T

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Target: scaffold1407 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1407
Description:

Target: scaffold1407; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 1408 - 1461
Alignment:
314 ttctggtcgtgcttctgcaggtggagaaagtgggagagaaaactggaaaccgtt 367  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||| |||||||    
1408 ttctgatcgtgcttctgcaggtggagcgagtgggagagaaaactgggaaccgtt 1461  T

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Target: scaffold0177 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 32437 - 32388
Alignment:
314 ttctggtcgtgcttctgcaggtggagaaagtgggagagaaaactggaaac 363  Q
    ||||| ||||||||||||||||||||  ||||||||||||||| ||||||    
32437 ttctgatcgtgcttctgcaggtggagcgagtgggagagaaaaccggaaac 32388  T

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