View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_23 (Length: 428)
Name: NF1243_low_23
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 132 - 407
Target Start/End: Complemental strand, 41437165 - 41436890
Alignment:
| Q |
132 |
aactaagtaccccataggaaacaagaatagatataaaattgatgagattaagtttcctcaactaataatctaatgtccttctttggttgattgtatactc |
231 |
Q |
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| T |
41437165 |
aactaagtaccccatgggaaacaagaatagatataaaattgatgagattaagtttcctcaactaataatctaatgtccttctttggttgattatatactc |
41437066 |
T |
|
| Q |
232 |
ctactatttcaagtatactttcgcctatcgtccattatacatcttgatatcttgcaggtaatgggagatccattttatgctgtaactttgtatgcattgc |
331 |
Q |
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| T |
41437065 |
ctactatttcaagtatactttcgcctatcgtccattatacatcttgatatcttgcaggtaatgggagatccattttatgctgtaacttttcatgcattgc |
41436966 |
T |
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| Q |
332 |
ttagttatagcttatagtttatgtgaccctaaaccttgtccaatgcctcgcagttagaatctacaaatgtctttat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41436965 |
ttagttatagcttatagtttatgtgaccctaaaccttgtccaatgcctcgcagttagaatctacaaatgtctttat |
41436890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 131
Target Start/End: Original strand, 8762196 - 8762226
Alignment:
| Q |
101 |
gaattccattgtttggatgggagaatgtaat |
131 |
Q |
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| T |
8762196 |
gaattccattgtttggatgggagaatgtaat |
8762226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 131
Target Start/End: Original strand, 19475886 - 19475916
Alignment:
| Q |
101 |
gaattccattgtttggatgggagaatgtaat |
131 |
Q |
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| T |
19475886 |
gaattccattgtttggatgggagaatgtaat |
19475916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 131
Target Start/End: Original strand, 10480189 - 10480219
Alignment:
| Q |
101 |
gaattccattgtttggatgggagaatgtaat |
131 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10480189 |
gaattccattgtttggatgggagaatgtaat |
10480219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 37800241 - 37800317
Alignment:
| Q |
169 |
attgatgagattaagtttcctcaactaataatctaatgtccttctttggttgattgtat--actcctactatttcaa |
243 |
Q |
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| T |
37800241 |
attgatgggattaagttttgttaactaataatctaatgttcttctttgatcgattatatgcactccttctatttcaa |
37800317 |
T |
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