View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_25 (Length: 422)
Name: NF1243_low_25
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 44 - 414
Target Start/End: Complemental strand, 51846090 - 51845720
Alignment:
| Q |
44 |
agaaatgtcaatccacgtgcaattcctttcactatctttaaacgtgttggccaatttagttcagcatgacttgttcctctatcacctgtacaacaaacat |
143 |
Q |
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| T |
51846090 |
agaaatgtcaatccacgtgcaattcctttcactatctttaaacgtgttggccaatttagttcagcatgacttgttcctctatcacctgtacaacaaacat |
51845991 |
T |
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| Q |
144 |
tacacatgaatgtgtataaatgactataaaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaaataaaatgtgacagc |
243 |
Q |
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| T |
51845990 |
tacacatgaatgtgtataaatgactataaaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaaataaaatgtgacagc |
51845891 |
T |
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| Q |
244 |
gttaccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaata |
343 |
Q |
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| T |
51845890 |
gttaccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaata |
51845791 |
T |
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| Q |
344 |
ttacggtttctaagcctcccaaaccgtctcatctcggcatcaaatatatctctgcttactttattcatctc |
414 |
Q |
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| T |
51845790 |
ttacggtttctaagcctcccaaaccgtctcatctcggcatcaaatatatctctgcttactttattcatctc |
51845720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 246 - 387
Target Start/End: Original strand, 18628238 - 18628379
Alignment:
| Q |
246 |
taccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatatt |
345 |
Q |
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| T |
18628238 |
taccgtgcaagacatataacaagcttcctttaggcttatactcagtaacaaaaagcttttcctctcgacgataatgataagccaaaggagtcaaaatatt |
18628337 |
T |
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| Q |
346 |
acggtttctaagcctcccaaaccgtctcatctcggcatcaaa |
387 |
Q |
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| T |
18628338 |
agcatgtctaatcctcccaaactgtctcatctcagcatcaaa |
18628379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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