View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_26 (Length: 418)
Name: NF1243_low_26
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 1694564 - 1694868
Alignment:
| Q |
13 |
attcttatcatcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctgatc |
112 |
Q |
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| T |
1694564 |
attcttatcatcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaatagttccagagattactccaataccattactgatc |
1694663 |
T |
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| Q |
113 |
tgcaataatcagtaaaaatgtatattaataacatgggttaagtataaatcatt---------------catccaattattaactcacaagtcacaacaat |
197 |
Q |
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| T |
1694664 |
tgcaataatcagtaaaaatgtatattaataacatgggttaagtataaatctttaatccaattgaattacatacaattattaactcacaaatcacaacaat |
1694763 |
T |
|
| Q |
198 |
actataggaatataaattaaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaa |
297 |
Q |
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| T |
1694764 |
actataggaatata---------aattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaa |
1694854 |
T |
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| Q |
298 |
gagagagccagaat |
311 |
Q |
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| T |
1694855 |
gagagagccagaat |
1694868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 1684146 - 1684414
Alignment:
| Q |
16 |
cttatcatcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctgatctgc |
115 |
Q |
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| T |
1684146 |
cttatcatcatcaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctgatctgc |
1684245 |
T |
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| Q |
116 |
aataatcagtaaaaatgtatattaa-taacatgggttaagtataaatcattcatccaattattaactcacaagtcacaacaatactataggaatataaat |
214 |
Q |
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| T |
1684246 |
agtagtcagtgaaagtgtatattaattaatatgggttaagtataaatcattcatccaattattaactcacaagtcacaacaatactataggaatata--- |
1684342 |
T |
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| Q |
215 |
taaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagtt |
292 |
Q |
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| T |
1684343 |
------aattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgaggaagtt |
1684414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 307
Target Start/End: Original strand, 1699864 - 1699956
Alignment:
| Q |
215 |
taaatgaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaagagagagcca |
307 |
Q |
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| T |
1699864 |
taaattaattaccaagacataaatatccaatgggtggatgagagcatatgttgtccagcacaaaccattgaggaagttggttagagagagcca |
1699956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 1970554 - 1970616
Alignment:
| Q |
19 |
atcatcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagt |
81 |
Q |
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| T |
1970554 |
atcatcatcaatctgattttctcccttgcacgagtaataagcatataatatgagctgaacagt |
1970616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 1673944 - 1674064
Alignment:
| Q |
21 |
catcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctgatctgcaataa |
120 |
Q |
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| T |
1673944 |
catcatcattcttattttctcccttgcaccaaaaataaacatataatatgagctgaacaaaacctgagattgctccaataccattgctgacctaaaatat |
1674043 |
T |
|
| Q |
121 |
tcagtaaaaatgtatattaat |
141 |
Q |
| |
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||| || ||||||||||||| |
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| T |
1674044 |
tcaataccaatgtatattaat |
1674064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 1699287 - 1699335
Alignment:
| Q |
60 |
catatagtatgagctgaacagttccagagattactccaataccattgct |
108 |
Q |
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|||||||||||||||||||| ||||||| | ||||||||||||||||| |
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| T |
1699287 |
catatagtatgagctgaacaattccagaaaccactccaataccattgct |
1699335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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