View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_27 (Length: 416)
Name: NF1243_low_27
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Original strand, 30723207 - 30723585
Alignment:
| Q |
9 |
agcatagggcaaacgaggatataatcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgt |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30723207 |
agcataaggcaaacgaggatataatcagcaatctacctgattcacttataacttacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgt |
30723306 |
T |
|
| Q |
109 |
gttatctaaacgatggatagattgttggactttcgtcaccaaggtgaacttagatgattgtgtgttctttaaacacaagaagaagaaatcaggtggaaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
30723307 |
gttatctaaacgatggatagattgttggactttcgtcaccaaggtgaacttagatgatagtatgttctttaaacacaagaagaagaaatcaggtggaaaa |
30723406 |
T |
|
| Q |
209 |
cggtactttataaactttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttccc |
308 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30723407 |
cggtactttataaactttgtcaatagagcacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttccc |
30723506 |
T |
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| Q |
309 |
ttctaaatacatggatctctggcatcttgaaacgaaatgtaaaaaagctttctatcactacatatttagagctaccctt |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30723507 |
ttctaaatacatggatctctggcatcttgaaacgaaatgtaaaaaagctttctatcactacatatttagagctaccctt |
30723585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 301
Target Start/End: Original strand, 30715529 - 30715807
Alignment:
| Q |
26 |
gatataatcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgttatctaaacgatgga |
125 |
Q |
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|||||||||||||| ||||| ||||||||| | ||| |||||| || | | |||| || ||||| ||||||||||| ||||||||||| | | | |||| |
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| T |
30715529 |
gatataatcagcaagctaccctattcacttagatctcgcattctctcatttctcccgacaaaagatgctgctcgtacgagtgtgttatcaagaagttgga |
30715628 |
T |
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| Q |
126 |
tagattgttggactttcgtcaccaaggtgaacttagatgattgtgtgttc--tttaaacacaag-aagaagaaatcaggtggaaaacggtactttataaa |
222 |
Q |
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||| | ||||| | |||||||| || ||||||||||| |||||||| || || ||| ||||| |||||||||||||||| |||||||||| |
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| T |
30715629 |
cagaaagctggacatcaatcaccaagttggacttagatgatagtgtgttccattctcccaaaagtaagaaaaaatcaggtggaaaacaacactttataaa |
30715728 |
T |
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| Q |
223 |
ctttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgat |
301 |
Q |
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| T |
30715729 |
ctttgtcaatagagcacttctgcttaatgagaattatagtgtggaatgtttttctcttgtgatcactaataagtatgat |
30715807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 11360372 - 11360278
Alignment:
| Q |
23 |
gaggatataatcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgttatctaa |
117 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||||||||| | |||||| | ||||| ||||| || | |||||||||||| |||||||| |
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| T |
11360372 |
gaggatttaatcagtaatctacctgattcacttataactcacattatatcttgtcttcctacaaaagatgcagttcgtacaagtgtcttatctaa |
11360278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 224 - 340
Target Start/End: Original strand, 13543478 - 13543594
Alignment:
| Q |
224 |
tttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttcccttctaaatacatgga |
323 |
Q |
| |
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||||||||||||| |||| ||||||||||||| | | || ||||||||||||||||| |||||||| |||||||| | || ||||||| |||||||| |
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| T |
13543478 |
tttgtcaatagagcccttcttcttactaaaagtgaaaatgtggaaagtttttctcttgtgatcactaataagtatgacctatctcttctaagtacatgga |
13543577 |
T |
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| Q |
324 |
tctctggcatcttgaaa |
340 |
Q |
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||||| |||| |||||| |
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| T |
13543578 |
tctcttgcatgttgaaa |
13543594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 224 - 340
Target Start/End: Original strand, 9678534 - 9678650
Alignment:
| Q |
224 |
tttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttcccttctaaatacatgga |
323 |
Q |
| |
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||||||||||||| |||| ||||||||||||| | | || ||||||||||||||||| |||||||| |||||||| | || ||||||| |||||||| |
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| T |
9678534 |
tttgtcaatagagcccttcttcttactaaaagtgaaaatgtggaaagtttttctcttgtgatcactaataagtatgacctatctcttctaagtacatgga |
9678633 |
T |
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| Q |
324 |
tctctggcatcttgaaa |
340 |
Q |
| |
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||||| |||| |||||| |
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| T |
9678634 |
tctcttgcatgttgaaa |
9678650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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