View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_28 (Length: 413)
Name: NF1243_low_28
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 79 - 317
Target Start/End: Original strand, 39705669 - 39705907
Alignment:
| Q |
79 |
aataaataaataaataaaatcccaattcatgttcatgttgcaaacttgcagttcaattagttatttcatcttctccagatagttgtgtagatcagatgga |
178 |
Q |
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| T |
39705669 |
aataaataaataaataaaatcccaattcatgttcatgttgcaaacttgcagttcaattagttatttcatcttctccagatagttgtgtagatcagatgga |
39705768 |
T |
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| Q |
179 |
aaatatggcaagcttgtggaatgacattggtgcataaaggaaaaggaaggtgcagcgatgccacctgtggcagttaactaccgcaatggaatcaaagacg |
278 |
Q |
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| T |
39705769 |
aaatatggcaagcttgtggaatgacattggtgcataaaggaaaaggaaggtgcagcgatgccacctggggcagttaactaccgcaatggaatcaaagacg |
39705868 |
T |
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| Q |
279 |
acaacatagtggcgactaaagcgacgatgacggaagtgg |
317 |
Q |
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| T |
39705869 |
acaacatagtggcgactaaagcgacgatgacggaagtgg |
39705907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 48569201 - 48569128
Alignment:
| Q |
18 |
aggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttcaataaataaataa |
91 |
Q |
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| T |
48569201 |
aggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttcaataaataaataa |
48569128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 10821885 - 10821937
Alignment:
| Q |
20 |
gtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa |
72 |
Q |
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| T |
10821885 |
gtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa |
10821937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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