View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_29 (Length: 412)
Name: NF1243_low_29
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 208 - 331
Target Start/End: Original strand, 1841577 - 1841700
Alignment:
| Q |
208 |
taacaatgttggcacatcctcttcatcttcatctccagcttttgtataagaaagattgttgtgttaccgttttgagttattttaagtataaaagcattta |
307 |
Q |
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| T |
1841577 |
taacaatgttggcacatcctcttcatcttcatctccagcttttgtataagaaagattgttgtgttactgttttgagttattttaagtataaaagcattta |
1841676 |
T |
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| Q |
308 |
tgcagagcttgtcaatattgttgg |
331 |
Q |
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| T |
1841677 |
tgcagagcttgtcaatgttgttgg |
1841700 |
T |
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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 314
Target Start/End: Complemental strand, 6526810 - 6526733
Alignment:
| Q |
237 |
catctccagcttttgtataagaaagattgttgtgttaccgttttgagttattttaagtataaaagcatttatgcagag |
314 |
Q |
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| T |
6526810 |
catctgcagcttttgtctaagaaagattgtaatgttactgttttgagtgattttaagtataaacgcattgatggagag |
6526733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 6472698 - 6472764
Alignment:
| Q |
169 |
gtgttgagtataagtttgagaagcaagtttcaggtgatttaacaatgttggcacatcctcttcatct |
235 |
Q |
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| T |
6472698 |
gtgttgagtataagtttgagaagaaaggttcaggtgatttactgatgttagcacaccctcttcatct |
6472764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 6506018 - 6505937
Alignment:
| Q |
158 |
gagaaccattt-gtgttgagtataagtttgagaagcaagtttcaggtgatttaacaatgttggcacatcctcttcatcttca |
238 |
Q |
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| T |
6506018 |
gagaaccattttgtgttgagtataagtttgagaagaatgtttcaggtgatttgttattattagcacaccctcttcatcttca |
6505937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 6515753 - 6515825
Alignment:
| Q |
166 |
tttgtgttgagtataagtttgagaagcaagtttcaggtgatttaacaatgttggcacatcctcttcatcttca |
238 |
Q |
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| T |
6515753 |
tttgtcttgagtataagtttgagaagaaaggttcaggtgatttgttattgttagcacaccctcttcatattca |
6515825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 13035398 - 13035462
Alignment:
| Q |
171 |
gttgagtataagtttgagaagcaagtttcaggtgatttaacaatgttggcacatcctcttcatct |
235 |
Q |
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| T |
13035398 |
gttgagtataagtttaataagaaaggttcaggtgatttactgatgttagcacaccctcttcatct |
13035462 |
T |
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