View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_32 (Length: 399)
Name: NF1243_low_32
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_32 |
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| [»] scaffold0743 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 97 - 387
Target Start/End: Original strand, 17944829 - 17945119
Alignment:
| Q |
97 |
gtagctataatgataactgtgctttgccattcgagaggatagaattgtgagacagtattgatctaaagctgaagtttgcatgcataaggggatttagagg |
196 |
Q |
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| T |
17944829 |
gtagctataatgataactgtgctttaccattcgagaggatagaattgtgagacagtattgatctaaagctgaagtttgcatgcataaggggatttagagg |
17944928 |
T |
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| Q |
197 |
caaagagcaagaagtgcaatttgcagatatgaatcaaaaacttgaagacaattactgaaaatgaggtgcctacaaaacattgaagataaatttgatattt |
296 |
Q |
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| T |
17944929 |
caaagagcaagaagtgcaatttgcaaatatgaatcaaaaacttgaagacaattactgaaaatgaggtgcctacaaaacattgaagataaatttgatattt |
17945028 |
T |
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| Q |
297 |
aattcagtgaatattataattcctaaggaaatgatgactccatcaaattaagacactatagctttcacgaatgaaaggaaactgaaagaat |
387 |
Q |
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| T |
17945029 |
aattcagtgaatactataattcctaaggaaatgatgactccatcaaattaagacactatagctttcacgaatgaaaggaaactaaaagaat |
17945119 |
T |
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Target: scaffold0743 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 4209 - 4085
Alignment:
| Q |
97 |
gtagctataatgataactgtgctttgccattcgagaggatagaattgtgagacagtattgatctaaagctgaagtttgcatgcataaggggatttagagg |
196 |
Q |
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|||||| ||||||||| |||| ||| |||||||||||| |||||||||| |||| |||||||| |||||||||||||| ||| ||||||||||||||||| |
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| T |
4209 |
gtagctctaatgataattgtgttttaccattcgagaggttagaattgtgtgacactattgatcaaaagctgaagtttgtatgtataaggggatttagagg |
4110 |
T |
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| Q |
197 |
caaagagcaagaagtgcaatttgca |
221 |
Q |
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| T |
4109 |
caaagagaaagaagtgcaatttgca |
4085 |
T |
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