View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_34 (Length: 396)
Name: NF1243_low_34
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_34 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 32099456 - 32099711
Alignment:
| Q |
1 |
tttccaacacatatatgttagtggagt-agcatagggagacagaaggttacgctagtcgctaattggaattgttcaaggcaacacatttgataaattata |
99 |
Q |
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| T |
32099456 |
tttccaacacatatatgttagtgaagttagaaaagggagacagaaggttacgctagtcgctaataggaattgttcaaggcaacacatttgataaattata |
32099555 |
T |
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| Q |
100 |
tttgacagctttcaataaactactatatattctgcatggctgccactatgttgggaaaatactacatttgattgccggagccatagtcaccc---nnnnn |
196 |
Q |
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| T |
32099556 |
tttgacagctttcaataaactactatatattctgcatggctgccactatgttgggaaaatactacatctgattgccggagccatagtcacccaaaaaaaa |
32099655 |
T |
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| Q |
197 |
nnnttataatttagtacatacatatatattgtgatcatctattaattaactaagtg |
252 |
Q |
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| T |
32099656 |
aaattataatttagtacatacatatatattgtgatcatctattaattaactaagtg |
32099711 |
T |
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Target: scaffold0019 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 245 - 310
Target Start/End: Complemental strand, 37239 - 37174
Alignment:
| Q |
245 |
actaagtgcttgtttggttcaacatccactttgttaatatcacgtctcaatatttattttcctttg |
310 |
Q |
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| T |
37239 |
actaagtgcttgtttggttcaacatccactttgttaatatcgcgtctcaatacttattttcctttg |
37174 |
T |
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