View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_35 (Length: 394)
Name: NF1243_low_35
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 373
Target Start/End: Original strand, 35479681 - 35480036
Alignment:
| Q |
7 |
agttggtcgcctgcagaagaagataagttggtgtttttcccaaccactaggacgcagaagaggttccctatcatagtgaagcgtagagtggagtccaaat |
106 |
Q |
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| T |
35479681 |
agttggtctcctgcagaagaagataagttggtgtttttcccaaccactaggacgcagaagaggttccctatcatagtgaagcgtagagtggagtccaaat |
35479780 |
T |
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| Q |
107 |
tatgtaattaattaaagtgccagtataagtaataatacagttatatctactagtttagcagttcatatgtta-ttttttccttttatggttataagataa |
205 |
Q |
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| T |
35479781 |
tatgtaattaattaaagtgccagtataagtaataatacagttatatctactagtttagtagttcatatgttatttttttccttttatggttataagataa |
35479880 |
T |
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| Q |
206 |
agtgtcttgttaaatcacttggaaatgaaaatataatataatatagtttaatcagttcatgagcttggcataaatcctttaatgtataatatcatactaa |
305 |
Q |
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| T |
35479881 |
aatgtcttgtt------------aatgaaaatataatataatatagtttaatcaggtcatgagcttggcataaatcctttaatgtataatatcatactaa |
35479968 |
T |
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| Q |
306 |
atccttattagaagaaataaaaagaaaagccaccaattcatatttggtgctttcactagacaacataa |
373 |
Q |
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| T |
35479969 |
atccttattagaagaaataaaaagaaaagccaccaattcatatttggtgctttcactagacaacataa |
35480036 |
T |
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Back To:
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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 31557617 - 31557695
Alignment:
| Q |
16 |
cctgcagaagaagataagttggtgtttttcccaaccactaggacgcagaagaggttccctatcatagtgaagcgtagag |
94 |
Q |
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| T |
31557617 |
cctgctgaagaagataagttggtgttttttccaaccactaggacgcagaagaggtatcctattttagtgaagcgcagag |
31557695 |
T |
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