View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_4 (Length: 605)
Name: NF1243_low_4
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 30 - 595
Target Start/End: Original strand, 16300130 - 16300695
Alignment:
| Q |
30 |
tcaagtagttaaggttttgaagagaggtctaacaatcggtagtaagtgctaccctattgcagtcagactgaaagaaagcttttaattttagtttttcatc |
129 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
16300130 |
tcaagtagttaaggttttgaagagaggtccaacaatcggtagtaagtgctacccttttgcagtcagacttaaagaaatcttttaattttagtttttcatc |
16300229 |
T |
|
| Q |
130 |
caagtacaactgaaaacaatccctggcaattgtcctcctagaaggaataataaacaaaggttgcatcgtattactgtagtgtttaaatccttctccctca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16300230 |
caagtacaactgaaaacaatccctggcaattgtcctcctagaaggaataataaacaaaggttgcatcgtattactgtagtgtttaaatccttctccctca |
16300329 |
T |
|
| Q |
230 |
actgtcctaaatggcttctcatctaaaattatataaactgccaaagacttcctacaagcaagctggttaaatctagagctaaccggaaccaaactagaac |
329 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16300330 |
actgtcctaaatggcttctcatctaaaactatataaactgccaaagacttcctacaagcaagctggttaaatctagagctaaccggaaccaaactagaac |
16300429 |
T |
|
| Q |
330 |
cctcaatagctgaatatgagagaatggtttggttggggccattttttagaaaacattgaaggataagacatttagtgatatgtgtgttcaagtttttggt |
429 |
Q |
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|||||| ||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16300430 |
cctcaacagctggatatgaaagaatggtttggttggggccattttttaaaaaacattgaaggataagacatttagttatatgtgtgttcaagtttttggt |
16300529 |
T |
|
| Q |
430 |
accatgagtcttagggtcacacaggtatctttggtgacaatgtttacaagaagcagttggtttgtcaacctcactatcaggtaaccttataaagtgttcc |
529 |
Q |
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| T |
16300530 |
accatgagtcttagggtcacacaggtatctttggtgacaatgtttacaagcagcagttggtttgtcaacctcactatcaggtaaccttataaagtgttcc |
16300629 |
T |
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| Q |
530 |
cagcaagccgctgtttgcctaggaccatttgcattagcctttctcttctttaatggttgagtatta |
595 |
Q |
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| T |
16300630 |
cagcaagccgctgtttgcctaggaccatttgcattagcctttctcttctttaatggttgagtatta |
16300695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 30 - 595
Target Start/End: Original strand, 22897627 - 22898192
Alignment:
| Q |
30 |
tcaagtagttaaggttttgaagagaggtctaacaatcggtagtaagtgctaccctattgcagtcagactgaaagaaagcttttaattttagtttttcatc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
22897627 |
tcaagtagttaaggttttgaagagaggtccaacaatcggtagtaagtgctaccctattgcagtcagacttaaagaaaacttttaattttagtttttcatc |
22897726 |
T |
|
| Q |
130 |
caagtacaactgaaaacaatccctggcaattgtcctcctagaaggaataataaacaaaggttgcatcgtattactgtagtgtttaaatccttctccctca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22897727 |
caagtacaactgaaaacaatccctggcaattgtcctcctagaaggaataataaacaaaggttgcatcgtattactgtagtgtttaaatccttctccctca |
22897826 |
T |
|
| Q |
230 |
actgtcctaaatggcttctcatctaaaattatataaactgccaaagacttcctacaagcaagctggttaaatctagagctaaccggaaccaaactagaac |
329 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22897827 |
actgtcctaaatggcttctcatctaaaactatataaactgccaaagacttcctacaagcaagctggttaaatctagagctaaccggaaccaaactagaac |
22897926 |
T |
|
| Q |
330 |
cctcaatagctgaatatgagagaatggtttggttggggccattttttagaaaacattgaaggataagacatttagtgatatgtgtgttcaagtttttggt |
429 |
Q |
| |
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|||||||||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
22897927 |
cctcaatagctggatatgaaaaaatggtttggttggggccattttttaaaaaacattgaaggataagacatttagtaatatgtgtgttcaagttaatggt |
22898026 |
T |
|
| Q |
430 |
accatgagtcttagggtcacacaggtatctttggtgacaatgtttacaagaagcagttggtttgtcaacctcactatcaggtaaccttataaagtgttcc |
529 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22898027 |
accatgagtcttagggtcacacaggtatctttggtgacaatgtttacaagcagcagttggtttgtcaacctcactatcaggtaaccttataaagtgttcc |
22898126 |
T |
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| Q |
530 |
cagcaagccgctgtttgcctaggaccatttgcattagcctttctcttctttaatggttgagtatta |
595 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22898127 |
cagcaagccgctgttttcctaggaccatttgcattagcctttctcttctttaatggttgagtatta |
22898192 |
T |
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