View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_41 (Length: 379)
Name: NF1243_low_41
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 19912374 - 19912035
Alignment:
| Q |
11 |
cagagaaccgtcgagagaagtttgctggcttgactcttgacgacgtcttagccaatcaaaagagattagcaactgcaccacctagcaaaccatcacctcc |
110 |
Q |
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| T |
19912374 |
cagagaaccgtcgagagaagtttgctggcttgactcttgacgacgtcttagccaatcaaaagagattagcaactgcaccacctagcaaaccatcacctcc |
19912275 |
T |
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| Q |
111 |
gaagagtcgaacgcttgtagacaccatcaaagaagacgagatcaacaaaaaagaccgcaggtaacaacatattattgtaataacaccatcttttcgatta |
210 |
Q |
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| T |
19912274 |
gaagagtcgaacgcttgtagacaccatcaaagaagacgagatcaacaaaaaagaccgcaggtaacaacatattattgtaataacaccatcttttcgatta |
19912175 |
T |
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| Q |
211 |
cattgttttgtttttaatgaaaaattatgttagtatagattggtctatgagaaatcaaaatgctagtgtttagatgagatgacatatgtgtattgtcctc |
310 |
Q |
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| T |
19912174 |
cattgttttgtttttaatgaaaaattatgttagtatagattggtctatgagaaatcaaaatgctagtgtttagatgagatgacatatgtgtattgtcctc |
19912075 |
T |
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| Q |
311 |
ttacattgtcgaggaaagactatggttctcaaatagttag |
350 |
Q |
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| T |
19912074 |
ttacattgtcgaggaaagactatggttctcaaatagttag |
19912035 |
T |
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