View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_44 (Length: 371)
Name: NF1243_low_44
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 332
Target Start/End: Original strand, 18600835 - 18601174
Alignment:
| Q |
8 |
aagcaaaggatataagaacagcttgaaagaattgactccaattgagttcacctatgcacttttctattgtgaagccaagagaatgaaggtgtttatttgg |
107 |
Q |
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| T |
18600835 |
aagcaaaggatataagaagagcttgaaagaattgactccaattgagttcacctatgcacttttctattgtgaagccaagagaatgaaggtgtttatttgg |
18600934 |
T |
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| Q |
108 |
tgatgtttttgtgtcactagtgttattgggttggctcagaagaggagttggatcacccatatcaagagtctatgtagtttttctatagaattcttgtcgt |
207 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
18600935 |
tgatgtttttgtgtcactggtgttattgggttggctcagaagaggagttggatcacccatatcaagagtc--tgtagtttttctatagaattcttgttgt |
18601032 |
T |
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| Q |
208 |
aatgactacctattctatac--------------tatatatggggaatatgcatgcatagctaactatagtatcatctagatattctta----gtagtaa |
289 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| |
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| T |
18601033 |
aatgactacctattctatactatatatatatatatatatatggggaatatgcatgcataact-actatagtatcatctagatattcttagtacgtagtaa |
18601131 |
T |
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| Q |
290 |
ttgaattttataattatttttcataaaataacaccctcatgtc |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18601132 |
ttgaattttataattatttttcataaaataacaccctcatgtc |
18601174 |
T |
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