View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_45 (Length: 370)
Name: NF1243_low_45
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_45 |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 17376533 - 17376432
Alignment:
| Q |
194 |
ttacaccgcttaccgtatcttcaaatctacatctctgtttgttttatttcaatcgaattcgaacttctctatatactcaatttttattagttagattgtc |
293 |
Q |
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| T |
17376533 |
ttacaccgcttactgtatcttcaaatctacatctctgtttgatttgtttcaatcgaattcgaacttctttatatactcaatttttattagttagattgtc |
17376434 |
T |
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| Q |
294 |
at |
295 |
Q |
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|| |
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| T |
17376433 |
at |
17376432 |
T |
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Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 1843787 - 1843866
Alignment:
| Q |
19 |
tttttgaaacagttttacactgtcaagcactgaagttgtttt-agcttttacttgatcaacaaatcaacctatttacaag |
97 |
Q |
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| T |
1843787 |
tttttgaaacagttttacactgtcaagcactaaagttttttttagcttttacttgatcaacaaatcaacctatttacaag |
1843866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 38637019 - 38637135
Alignment:
| Q |
3 |
cattatgaattcttattttttgaaacagttttacactgtcaagcactgaagttgttttagcttttacttgatcaacaaatcaacctatttacaagcatgt |
102 |
Q |
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| T |
38637019 |
cattatgaattcttattttttgaaacagttttacactgttaag--------tttttttagcttttacttgatcaacaaatcaacttatttacaagacttt |
38637110 |
T |
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| Q |
103 |
ttgctgaagtttttggtgactaaat |
127 |
Q |
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| T |
38637111 |
ttgttgaagctttttgtggctaaat |
38637135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 1538652 - 1538585
Alignment:
| Q |
294 |
atttggaaaacaatgcaccttcaagattgtttggttggcagacatctgaaacatcttctcaacctttg |
361 |
Q |
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| T |
1538652 |
atttcgaagacaatgaaccttcaagtttttttgattggcagacatctgaaacatcttttcaacctttg |
1538585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 361
Target Start/End: Complemental strand, 17768699 - 17768632
Alignment:
| Q |
294 |
atttggaaaacaatgcaccttcaagattgtttggttggcagacatctgaaacatcttctcaacctttg |
361 |
Q |
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| T |
17768699 |
atttcgaagacaatgaaccttcaagtttttttgattggcagacatctgaaacatcttttcaacctttg |
17768632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 22119234 - 22119266
Alignment:
| Q |
137 |
ttcttttcaaatatcaacttgtattctaattct |
169 |
Q |
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| T |
22119234 |
ttcttttcaaatatcaatttgtattctaattct |
22119266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 2612 - 2644
Alignment:
| Q |
137 |
ttcttttcaaatatcaacttgtattctaattct |
169 |
Q |
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| T |
2612 |
ttcttttcaaatatcaagttgtattctaattct |
2644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 15328742 - 15328786
Alignment:
| Q |
194 |
ttacaccgcttaccgtatcttcaaatctacatctctgtttgtttt |
238 |
Q |
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| T |
15328742 |
ttacaccgcttaccgtatcggcaaatctacatctctatttctttt |
15328786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 15509111 - 15509155
Alignment:
| Q |
194 |
ttacaccgcttaccgtatcttcaaatctacatctctgtttgtttt |
238 |
Q |
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||||||||||||||||||| ||||||||||||||| ||| |||| |
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| T |
15509111 |
ttacaccgcttaccgtatcggcaaatctacatctctatttctttt |
15509155 |
T |
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