View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_46 (Length: 366)
Name: NF1243_low_46
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 82 - 271
Target Start/End: Original strand, 55016951 - 55017140
Alignment:
| Q |
82 |
tattctggcagatgctagtgtggagttttacacggcttggttgtcagaaaatccaaatacctggaaggatccggatgtgtttcgacccgagaggtttttg |
181 |
Q |
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| T |
55016951 |
tattccggcagatgctagtgtggagttttacacggcttggttgtcagaaaatccaaatacctggaaggatccggatgtgtttcgacccgagaggtttttg |
55017050 |
T |
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| Q |
182 |
aatggggatggggttgatgttgatattacaggaactaaagagatgaagatgatgccgtttggtgctgggaggaggatttgtccagcatgg |
271 |
Q |
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| T |
55017051 |
aatggggatggggttgatgttgatattacaggaactaaagagatgaagatgatgccgtttggtgctgggaggaggatttgtccagcatgg |
55017140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 41127291 - 41127354
Alignment:
| Q |
201 |
ttgatattacaggaactaaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc |
264 |
Q |
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| T |
41127291 |
ttgatattaccgggactaaagagataaagatgatgccgtttggagttgggaggagaatttgtcc |
41127354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 26494893 - 26494939
Alignment:
| Q |
218 |
aaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc |
264 |
Q |
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| T |
26494893 |
aaagagataaagatgatgccgtttggagcagggaggaggatttgtcc |
26494939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 2327264 - 2327327
Alignment:
| Q |
201 |
ttgatattacaggaactaaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc |
264 |
Q |
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| T |
2327264 |
ttgatattacagggagtaaagagatcaagatgatgccgtttggagctggtaggagaatttgtcc |
2327327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 2330979 - 2331042
Alignment:
| Q |
201 |
ttgatattacaggaactaaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc |
264 |
Q |
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|||| |||||||||| ||||||||| ||||||||||| ||||| ||||||||||| |||||||| |
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| T |
2330979 |
ttgacattacaggaagtaaagagataaagatgatgccatttggagctgggaggagaatttgtcc |
2331042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 2294096 - 2294159
Alignment:
| Q |
201 |
ttgatattacaggaactaaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc |
264 |
Q |
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|||| |||||||||| ||||||||| ||||||||||||||||| ||||| || || |||||||| |
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| T |
2294096 |
ttgacattacaggaagtaaagagataaagatgatgccgtttggagctggaagaagaatttgtcc |
2294159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 2321411 - 2321474
Alignment:
| Q |
201 |
ttgatattacaggaactaaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc |
264 |
Q |
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||||||||| ||| | ||||||||| ||||||||||||||||| ||||| ||||| |||||||| |
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| T |
2321411 |
ttgatattatagggagtaaagagataaagatgatgccgtttggagctggaaggagaatttgtcc |
2321474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 2310436 - 2310490
Alignment:
| Q |
210 |
caggaactaaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc |
264 |
Q |
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|||||| ||||||||| ||||||||||||||||| ||||| || || |||||||| |
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| T |
2310436 |
caggaagtaaagagataaagatgatgccgtttggagctggaagaagaatttgtcc |
2310490 |
T |
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