View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_49 (Length: 354)
Name: NF1243_low_49
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 27413232 - 27413379
Alignment:
| Q |
102 |
aatatatatacatgaaattaaaattgtggtgcaaaagccttaatcgtgtacgaggcagcttcctttcataagcaagtgaacaagaacaatgacagtaaca |
201 |
Q |
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| T |
27413232 |
aatatatatacatgaaattaaaattgtggtgcaaaagccttaatcgtgtatgaggcagcttcctttcataagcaagtgaacaagaacaatgacagtaaca |
27413331 |
T |
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| Q |
202 |
aggtcaattattctgctaatataacgggcctcatcctatggtccctgt |
249 |
Q |
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| T |
27413332 |
aggtcaattattctgctaatataacgggcctcattctatggttcctgt |
27413379 |
T |
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