View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_5 (Length: 597)
Name: NF1243_low_5
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 205 - 568
Target Start/End: Original strand, 495035 - 495399
Alignment:
| Q |
205 |
tttgatgcactatgatatattagttattagtaatt-actattatatcaatgctttaaaaatataatttcccccttgaacagagaaaatattgtgttttcg |
303 |
Q |
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| T |
495035 |
tttgatgcactatgataaattagttattagtaatttactattgtatcaatgctttaaaaatataatttccccctagaacagagaaaataatgtgtaatca |
495134 |
T |
|
| Q |
304 |
gtgtagtctgcctgtcaaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattg |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
495135 |
gtgtagtctgcctgtcaaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcatcagaaactgaccaattg |
495234 |
T |
|
| Q |
404 |
taaggaagcttgattttaggctcaactcttctgcttctttcacctacattctcaatgaacggcataggaagttgtgtttccgatgtcctttttaaaccat |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
495235 |
taaggaagcttgattttaggctcaactcttctgcttctttgccctacattctcaatgaacggcataggaagttgtgtttccgatgtcctttttaaaccct |
495334 |
T |
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| Q |
504 |
tcttggttagcacacgaaacccccatttcttcataatcaaaccatggccatcttcgccagcttta |
568 |
Q |
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| T |
495335 |
tcttggttagcacgcgaaacccccatttcttcataatcaaaccatggccatcctcgccagcttta |
495399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 494672 - 494721
Alignment:
| Q |
14 |
aggcctagcggagactgaaatttcacatgta-tttttacattccatcact |
62 |
Q |
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| T |
494672 |
aggcctagcggagactgaaatttcacatgtattttttaaattccatcact |
494721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 10979533 - 10979640
Alignment:
| Q |
74 |
ggaatagaatcaaataagaaatttgagctcaaatccaaaacttcaagcaaagatagccgatgaatcttatcaggaagtggacaataaattcct-aagaaa |
172 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| | |||||| |||||| |
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| T |
10979533 |
ggaatagaaccaaataagaaatttgaactcaaatccaaaacttcaagcaaagatagcctatgaattttatcagaaagtggaccccatattcctaaagaaa |
10979632 |
T |
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| Q |
173 |
ccaaacta |
180 |
Q |
| |
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|||||||| |
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| T |
10979633 |
ccaaacta |
10979640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 441
Target Start/End: Complemental strand, 25501091 - 25500970
Alignment:
| Q |
320 |
aaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgattt |
419 |
Q |
| |
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|||||||| |||||||||||||| || |||| |||||||||| || |||| |||||||||||| ||||||| |||||||||||||||| | ||||| |
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| T |
25501091 |
aaaaggccaagattaaagagattagttactttccccttggcttgtttcatctcgacttcatcttcatcagaaacataccaattgtaaggaagttggattt |
25500992 |
T |
|
| Q |
420 |
taggctcaactcttctgcttct |
441 |
Q |
| |
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||||||||| || |||||||| |
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| T |
25500991 |
taggctcaatgctactgcttct |
25500970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 322 - 444
Target Start/End: Complemental strand, 25492710 - 25492588
Alignment:
| Q |
322 |
aaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgatttta |
421 |
Q |
| |
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|||||| ||||||||||||| ||||||| |||||||||| || |||| |||||||||||| || |||| |||||||||||||||| | ||||||| |
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| T |
25492710 |
aaggccaagattaaagagatcagtttctttccccttggcttgtttcatctcgacttcatcttcatcacaaacataccaattgtaaggaagttggatttta |
25492611 |
T |
|
| Q |
422 |
ggctcaactcttctgcttctttc |
444 |
Q |
| |
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||||||| || ||||||||||| |
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|
| T |
25492610 |
ggctcaatgctactgcttctttc |
25492588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 428
Target Start/End: Complemental strand, 25642511 - 25642403
Alignment:
| Q |
320 |
aaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgattt |
419 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||||| | || ||||| ||||||||||| ||||||| ||||||||||||| || | ||||| |
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| T |
25642511 |
aaaaggccaagattaaagagatcagtttctttccccttggctccatccttctcggcttcatcttcatcagaaacaaaccaattgtaagggagttggattt |
25642412 |
T |
|
| Q |
420 |
taggctcaa |
428 |
Q |
| |
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||||||||| |
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| T |
25642411 |
taggctcaa |
25642403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 25473842 - 25473950
Alignment:
| Q |
320 |
aaaaggcctagattaaagagattgatttcttttcccttggcttct-tcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgatt |
418 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||||||||| |||| |||||||| | | |||||| ||||||| |||||||||||||||| | |||| |
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| T |
25473842 |
aaaaggccaagattaaagagatcggtttcttttcccttgg-ttctatcattctcgattgaatcttcgttagaaactaaccaattgtaaggaagttggatt |
25473940 |
T |
|
| Q |
419 |
ttaggctcaa |
428 |
Q |
| |
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|||| ||||| |
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| T |
25473941 |
ttagtctcaa |
25473950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 320 - 409
Target Start/End: Complemental strand, 25450057 - 25449968
Alignment:
| Q |
320 |
aaaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaagga |
409 |
Q |
| |
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|||||||| ||||||||||||| |||| || ||||||||||| || ||||| |||||||||| ||||||| |||||||||||||| |
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| T |
25450057 |
aaaaggccaagattaaagagatcagtttccttccccttggcttcatctttctcggcttcatcttctttagaaactaaccaattgtaagga |
25449968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 428
Target Start/End: Complemental strand, 25429256 - 25429197
Alignment:
| Q |
369 |
tctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgattttaggctcaa |
428 |
Q |
| |
|
|||| |||| ||||||| |||||||| |||||||||||||| | | |||||||||||||| |
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|
| T |
25429256 |
tctcgactttatcttcatcagaaactaaccaattgtaaggatgttagattttaggctcaa |
25429197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 438
Target Start/End: Original strand, 25431183 - 25431300
Alignment:
| Q |
321 |
aaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgatttt |
420 |
Q |
| |
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||||||| |||||| ||||| ||||| || | ||||||| | || ||||| ||||||||| |||||||| |||||||||||||||| | |||||| |
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| T |
25431183 |
aaaggccaagattagagagaccaatttccttccgcttggctgcatccttctcggcttcatctttgtcagaaactaaccaattgtaaggaagttggatttt |
25431282 |
T |
|
| Q |
421 |
aggctcaactcttctgct |
438 |
Q |
| |
|
||||||| ||| ||||| |
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|
| T |
25431283 |
cggctcaaatctactgct |
25431300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 423
Target Start/End: Complemental strand, 35153086 - 35152984
Alignment:
| Q |
321 |
aaaggcctagattaaagagattgatttcttttcccttggcttcttcattctcaacttcatcttcaacagaaactgaccaattgtaaggaagcttgatttt |
420 |
Q |
| |
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||||||| |||||| | |||| ||||||||| ||||||||| |||||||||||| || || ||| |||| |||||||||| ||||||| |||||| |
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| T |
35153086 |
aaaggcccagattataaagatcaatttcttttgacttggcttcagaattctcaacttcttcctcctcagtaactaaccaattgtagggaagctggatttt |
35152987 |
T |
|
| Q |
421 |
agg |
423 |
Q |
| |
|
||| |
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|
| T |
35152986 |
agg |
35152984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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