View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_low_54 (Length: 344)
Name: NF1243_low_54
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 4842698 - 4842739
Alignment:
| Q |
154 |
ctttatcgatcataatattttcttctaaacacaaacatagtt |
195 |
Q |
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| T |
4842698 |
ctttatcaatcataatattttcttctaaacacaaacatagtt |
4842739 |
T |
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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 4794400 - 4794433
Alignment:
| Q |
162 |
atcataatattttcttctaaacacaaacatagtt |
195 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4794400 |
atcataatattttcttctaaacacaaacatagtt |
4794433 |
T |
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